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Detailed information on CNT30543139


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LE44|SMP1_ARATH, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043839Brassica napusPrunus dulcis8.6521.5198.2557forward
CNT3073498Brassica napusBrassica juncea89.6895.6398.48591forward

Expression of CNT30543139

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LLPALKSLNGPLDFPARLKYIRALSNLCKGERKP*

Sequence

>CNT30543139
ATTTATTACCTGCTTTAAAATCATTAAATGGGCCTTTAGATTTTCCGGCCCGTTTAAAATATATCAGGGCCTTATCCAATTTATGTAAGGGAGAGAGGAA
ACCCTAGCTATATGTAAGTGGTGAGAGTTCAGCGAGCAGAGACGACGCATCTAAGTTCGGCGAATTCACCATGAGAGCCAAGTGGAAGAAGAAGCGCATG
AGGAGATTGAAGAGGAAGCGCAGGAAGATGAGACAGAGATCTAAGTAGTCTGCGTCATCGTGCCTTATCCATAAATCTCTGTGATCCCTTTCTTGTTTCT
CGAACCATGATCTCAGACGCTGCCTGATCCTTTCCCTTTTCGATGCCTTGAGCGCTTGAGAACAACTCTACAGGCTCAGACTCTGCGATCTTTCCTCCTT
CCAGTGGTGTCCCGTGTTTGTATCTCACTCGAATCGCCTCGTCTTCCGATTGCTTCGTTTGAGCGGTTGCATACTTTATGTCATCTTTGTTCTTTGCCAT
CTCTATGGTTTAATGGATAATGACTTGACATGGGACGTATATAAACAGTGCGAGGTTCTTCGTGTCACTCTCTAAGCTCTAGTGTTGTGCTTACTTCTCC
TTGTTGTGTTTTTCTTTTGTTGACACGTTCGCACTAGTTGCAATGACGTCAAAATAAAC