CANTATAdb - search

Detailed information on CNT30542882

BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLS9|PSBC_NASOF, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693553	Brassica napus	Oryza sativa	37.34	47.9	89.17	674	forward
CNT30196209	Brassica napus	Pisum sativum	20	67.48	89.47	361	forward
CNT30300556	Brassica napus	Triticum aestivum	37.34	39.44	89.02	674	forward
CNT30441515	Brassica napus	Aegilops tauschii	34.96	98.13	89.06	631	forward
CNT30425595	Brassica napus	Papaver somniferum	31.86	98.29	90.61	575	forward
CNT30109402	Brassica napus	Oryza longistaminata	36.95	50.65	89.51	667	forward
CNT30148380	Brassica napus	Brachypodium distachyon	22.88	30.46	88.62	413	forward
CNT30100129	Brassica napus	Oryza rufipogon	23.77	40.86	88.81	429	forward

Expression of CNT30542882

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGRLDHVSHLYRPIDRLIKKVTPYIFFYIVIVLTHRAMFYLAKKKIK*

>peptide 2 (52 aa)
MSFFNLLKSKPLGPLKGSNQGARRSQKRIVSPPKITSPVGERIKYLPKPVGP*

>peptide 3 (30 aa)
MFLILQAINNIHHLILLPTKKILINKGILS*

>peptide 4 (43 aa)
MPYFQLLFTTFILFGHEVKGSFLLHKWVDWIMYLIYIDQLIDL*

Sequence

>CNT30542882
ATGGACTTATATTTAATTTGAATGTGTAATTCGTGGAATGGGAGGGGTCATCTCATTTTTTGATCTGCAACGAATGAATTCAAGAGATAAGAGAATTAAG
GATACCCACCAAGAAGACTAATCCAATCCATAAAGATGTACCAGAAAATACAACATTTTTGTTACTCGACCACCCATCAGGAGACGCAAATACAACGGGT
ACACTAATCAGTAAGATTGATGAAGTAATAATTAATGCAAAAACAGCCAATTGAAAAGCAATAGTCATGTTTTTAATCCTCCAAGCTATTAACAATATAC
ACCATTTAATCCTCTTACCCACTAAAAAAATTTTAATAAATAAAGGGATTTTATCATGAATCCGTTTATTCGAGATGCCTTATTTCCAACTTCTTTTTAC
CACTTTTATTCTATTCGGACATGAAGTTAAAGGTTCTTTTTTACTTCACAAATGGGTAGACTGGATCATGTATCTCATTTATATAGACCAATTGATAGAC
TTATAAAGAAAGTCACACCCTATATCTTTTTCTACATAGTGATCGTATTAACTCATCGAGCTATGTTCTATTTGGCGAAAAAAAAGATAAAATAGAAATT
ATCTTTTGGAGAGATGGCCGAGTGGTTGATGGCTCCGGTCTTGAAAACCGGTATAGTTCATAAAAAATAACTATCGAGGGTTCGAATCCCTCTCTCTCCT
TTTGTTGGATGAATAGATTTTTTTCTTTATTGGCTTTTTTTACTTCTTAGCATCATAAAAAAGGAGAATGGCTCGGCTATACTATCCAGCCGAGCCAGAA
AAAACGAGATTGAATTGAAAGAAAGAAGACTTTTTAATATGACCCGATTTTTACTTTCCTATTTTAACTACTACTTTAGTTAAGAGGAGTCATAGAAAGA
ACAGGTTCAAAATCACGATCAATTCCTTTTTCAAATCCTGCTGCCGCTGCCCGAGCTCTTCCCGCGTGCCATAAATGACCCACGAATAGGAAGAATCCTA
GAACAAAATGAGAGGTAGATAACCAACTTCTCGGAGAGACGTAATTGACTGCATTGATCTCAGTAGCTACGCCCCCTACAGAATTTAAGGAACCTAAAGG
AGCATGAGTCATATATTCTGCAGAACGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTTAAGTCCAAACCATTAGGACCCCTTAAAGGTTCT
AACCAGGGAGCACGCAGATCCCAAAAACGCATTGTTTCTCCTCCAAAAATAACTTCTCCAGTCGGGGAACGCATTAAGTATTTACCTAAACCTGTAGGTC
CTTGAGCAGACCCCACGTTAGCTCCAAGACGTTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTCTGGCCCTGTAGGTCCGTAAAACTC
ACTAGGGTAAGCAGTATTATTAAACCAGACAAAACAACAAGCAATGAAACCACAAACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCCTCCCCAGAC
CATACAAGTGCGCGGCGAGCCCATGCAAAAGGTTTGGTTAAGATATGCCCTCCAATTATATCTTCCAAATCGTCCACACTAACAATCCATCCTTCTCCCC
CAAAGGGAGATTTTAGTAAATAACCAAATATAACACTTGGGCTAAGAGTCAAGTTTGTAATTTTTCTTACATCCCCCCCTCCTGGAGCCCAGGTATCATA
TACGCCCCCAAAATAGAGAGCCTTGAATACTAGAAGAAAAGCACCTACACCTAACAAAATTAAGTGAATACCCAAAATGGTGGTCATTTTATTTCTATCT
TTCCA