CANTATAdb - search

Detailed information on CNT30542695

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019984	Brassica napus	Citrullus lanatus	55.98	57.09	81.52	866	forward
CNT30235198	Brassica napus	Brassica oleracea	70.72	99.64	92.78	1094	forward
CNT30312399	Brassica napus	Camelina sativa	59.47	70.44	87.61	920	forward
CNT30114931	Brassica napus	Eutrema salsugineum	58.76	81.97	85.48	909	forward

Expression of CNT30542695

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MKSRLLLDVVVGKSSSILQLLAGKDQPLLVRWDSLLILDLGLDVINSVRALHLQSDSLSGQRLDENLHAST*

>peptide 2 (58 aa)
MRRCWSGGMPSLSWILAFTLSIVSELSTSNVMVLPVRVFTNICIPPRRRKTKWRVDSF*

>peptide 3 (40 aa)
MVSELSTSKVIVFPVNVLTKICMPPRRRKTKWSVDSFWML*

>peptide 4 (37 aa)
MLSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

Sequence

>CNT30542695
GCTTATAAAGAAAGAGACATGAGGACGCAAAGATAGTTCACCATTTATTCATCAGGGGCTTGATTTACAAGACCCCAAAACACACAAACCATAAGAAGCT
TATAACGAACGAGACATGAGGACGCAAAGATAGTTCATCATTTATTCATCAGGGGCTTGCTTTACAAGACCCCAAAACACACAAACCATAAGATCAAAAG
AAAACCAGATAGTAAACAGAGACACTGACGCTTGATACCACACAGGATAAGAGTTCTAAAAGCCACCACGGAGACGAAGGACCAGGTGAAGGGTAGACTC
CTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGA
ATCTTGGCCTTGACGTTGTCAATGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCATCCCACCACGAAGCCTGAGCA
CCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCGAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG
GATGCCTTCCTTGTCTTGGATCTTAGCCTTCACGTTATCAATAGTGTCCGAACTCTCAACCTCCAATGTGATGGTCTTGCCGGTAAGAGTCTTCACAAAT
ATCTGCATACCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCTAGAGTCCTTCCATCCTCCAACTGCTTGCCGG
CAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGAT
AGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCATACCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGA
GTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATAG
TGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAACGTCTTGACGAAAATCTGCATGCCTCCACGTAGACGCAAGACCAACTGCTTTCCGGC
GAAGATGAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATA
GTCTTTCCGGTCAACGTCTTGACGAAAATCTGCATGCCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCCAAAG
TTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGT
GTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTT