Detailed information on CNT30542600


BLAST search results

BLAST vs Swiss-Prot:
sp|P04782|CB24_PETSP, E-value = 3e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513343Brassica napusJuglans regia51.4860.6383.29365forward
CNT30200636Brassica napusPisum sativum23.5535.9986.83167forward
CNT30234927Brassica napusBrassica oleracea100.1488.3199.86710forward
CNT30171029Brassica napusTrifolium pratense27.7933.6887.31197forward
CNT30611387Brassica napusArabis alpina27.6471.5394.9196forward

Expression of CNT30542600

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVSKILQRSLTSDNSLNKESKHREHSQSSVLDLLHLQLREGLWVSSQTQRLREDAA*

>peptide 2 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 3 (48 aa)
SYWINGKSYKYLQILHLNNISFSSYTHKKQILKQITDKTSLTFRERSW*

>peptide 4 (54 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLQGRREPLLRRPLRLSAERNKTFIGCCL*

Sequence

>CNT30542600
GAGTTATTGGATTAATGGTAAATCATACAAATACTTGCAAATTTTACATCTAAACAACATCTCTTTCTCCTCTTACACTCACAAGAAGCAAATACTGAAG
CAAATTACAGATAAAACATCGCTCACTTTCCGGGAACGAAGTTGGTAGCAAAGGCCCATGCATTGTTGTTAACTGGATCAGCCAAATGGTCAGCAAGATT
CTCCAAAGGTCCCTTACCAGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCC
GCGAAGGCCTCTGGGTCAGTAGCCAAACCCAACGGCTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCAC
GGTTCCTCGCGAACGTCTCGGGATCGGCTGAGAGACCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCGGA
GAATGGGCCCAAGTACTTGACTCTCTCGGATCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACGGTCTTCCTCATTGTCACACGGCCGCTT
CCAAGGACTTCTGATGCTGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGCGGTTGAGTGCTGAGCGAAATAAAACGTTTATTGGTTGTTGTTTA
TGAGCCAAG