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Detailed information on CNT30542456


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42547|CATA3_ARATH, E-value = 5e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532478Brassica napusEucalyptus grandis41.943.5179.01181forward
CNT30373064Brassica napusArabidopsis thaliana66.250.0992.66286forward
CNT30501026Brassica napusCoffea canephora63.6618.0179.27275forward
CNT30282683Brassica napusChenopodium quinoa53.4725.0880.52231forward
CNT3070085Brassica napusQuercus suber53.735.5881.47232forward
CNT30708944Brassica napusGlycine max42.3632.1680.87183forward
CNT3046375Brassica napusPrunus dulcis26.6216.4883.48115forward
CNT30238041Brassica napusBrassica oleracea61.3434.8796.6265forward
CNT30313764Brassica napusCamelina sativa99.3162.5491.38429forward
CNT30263082Brassica napusBrassica rapa66.285.3783.92286forward
CNT30715065Brassica napusMalus domestica golden27.088.2384.62117forward
CNT30478285Brassica napusArabidopsis halleri27.0833.8289.74117forward
CNT30154268Brassica napusPrunus persica26.6224.1683.48115forward
CNT30570453Brassica napusVitis vinifera67.5966.5179.11292forward
CNT30704833Brassica napusPrunus avium26.6216.1181.74115forward
CNT3022395Brassica napusPopulus trichocarpa57.6460.5881.53249forward

Expression of CNT30542456

Peptides detected in this lncRNA

>peptide 1 (52 aa)
LISMHEVHKTFMVIVVVSTFGSIHRQLEIIRSKTMSLSVTISKDPTLKQLII*

Sequence

>CNT30542456
CCTCATCTCTATGCATGAAGTTCATAAAACCTTCATGGTGATTGTTGTGGTGAGCACATTTGGGAGCATTCACAGGCAGCTGGAGATAATTAGGTCCAAG
ACGATGTCTCTGAGTGTCACCATAAGCAAAGATCCTACACTGAAGCAGCTTATCATCTGAGTAGTAGATCCCAGGCACCACAAGACCAGGGTTGAAAGCA
AGCTGCTCAGTTTCATTAAAGAAGTTGTCAACGGTCCTGTTCAGAACCAAGCGACCAACTGGTTGCAAAGGCAAGATATCCTCAGGATAGTTACCTGATG
CAATAGCATCGTGGAGATCTTTAGTTGCGTGGCTGTGGTTGGCTCCTCCAACTACCTTAGCCTCTTCATCAGTGAGATTCTTGATCCCACAAGTTGGTTT
CCAGTGGAACTTCACAAAGAGAACTTTTCCTG