Detailed information on CNT30542306


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42547|CATA3_ARATH, E-value = 3e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Brassica napusJuglans regia23.0422.6584.91106forward
CNT30381388Brassica napusManihot esculenta21.9617.3283.17101forward
CNT30638258Brassica napusCapsicum annuum21.313.7183.6798forward
CNT3098188Brassica napusSolanum tuberosum43.2640.1283.92199forward
CNT30298786Brassica napusTriticum aestivum18.2632.0683.3384forward
CNT3080335Brassica napusBrassica juncea52.1742.3392.08240forward
CNT30611006Brassica napusArabis alpina17.6126.6491.3681forward

Expression of CNT30542306

Peptides detected in this lncRNA

>peptide 1 (98 aa)
GSINRQLQIVGSKTMSLSVTIRKDPTLEQLIIRVVNPRNHKTRVESELLSLIKEVINSPVQNQPTNRLQRQECRCGHRNLPCACSLVGYRRHQTSSTM*

Sequence

>CNT30542306
TGGGAGCATTAACCGGCAGCTGCAGATAGTTGGGTCCAAGACGATGTCTCTGAGTGTCACCATACGCAAAGATCCTACACTGGAGCAGCTTATCATCCGA
GTAGTAAATCCCAGGAACCACAAGACCAGGGTTGAAAGCGAGCTGCTCAGTCTCATTAAAGAAGTTATCAATAGTCCTGTTCAGAACCAACCGACCAACA
GGCTGCAGAGACAAGAGTGTAGGTGTGGACACCGAAACCTTCCATGTGCCTGTAGTCTTGTGGGATACCGACGTCATCAAACATCCAGCACCATGTGAGG
AGACTCTCTGGTAAGTGGGACATGTAGTCCAGTATCCTCCAGTACTCCTGGATGTTTGTTTTCGGGTTCGGCTTCAGGGCGTGGACGACGTCCGGGAACT
GAATCCCGTCGCGGATGAAGAACACCGGAGTGTTGTTTCCAACAAGATCGAAGTTTCCCT