Detailed information on CNT30541981


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224150Brassica napusHordeum vulgare4.835.9897.477reverse complement
CNT30234215Brassica napusBrassica oleracea28.5437.0988.21458forward
CNT30171414Brassica napusTrifolium pratense6.7931.3292.66109forward
CNT30207123Brassica napusHelianthus annuus5.7936.3310093forward
CNT30104537Brassica napusOryza rufipogon7.7940.9892125forward

Expression of CNT30541981

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLIVVTSISSLVHLYSISRATRGTKQANIRLSAKLRWGEVMLFLGF*

>peptide 2 (47 aa)
KKKIWRKEKSDLREDIVSQLVLAVSACAPVTVPFVCVLPPASSPLLR*

>peptide 3 (53 aa)
MGARSTIRFFITSTSPLSCGCSVGFKNLSAWVLFDKKVYTVSDVCCYFFHRGW*

>peptide 4 (82 aa)
MLVTLLFLWEQGAQSGFLSPVLLPCLAAVRLDLRICQLGFSLIRRFIPSLMCVVTSSIEVGEAASGKSMVIVCFRFLILILA*

>peptide 5 (83 aa)
KKKFGEKKKVISVKTLSLSLFWPCRRVRRLRFHLSVFCLLPALLSFGDMHDALVTEDDGIAHILFIDLDFHASPFQSGVKASR*

Sequence

>CNT30541981
AAAAAAAAAATTTGGCGAAAAGAAAAAAGTGATCTCCGTGAAGACATTGTCTCTCAGCTTGTTCTGGCCGTGTCGGCGTGTGCGCCGGTTACGGTTCCAT
TTGTCTGTGTTTTGCCTCCTGCCAGCTCTCCTCTCCTTCGGTGATATGCATGACGCCCTAGTTACAGAAGACGATGGCATCGCTCATATCTTATTTATAG
ATCTCGATTTTCATGCTTCTCCCTTTCAATCTGGAGTAAAGGCGAGTCGTTAGGAGCTTCGGAGGGTCTGTGGGGGGTCAGATTTAGTTGGCTTAGGGTT
TGGTGTCCCAATTTTCTCTTTCCAGTGAGGTCCAAACCCTAGCGGAGTCTGTGTGTAAGATCGTATGTTGGTAACTCTATTGTTCTTATGGGAGCAAGGA
GCACAATCCGGTTTTTTATCACCAGTACTTCTCCCTTGTCTTGCGGCTGTTCGGTTGGATTTAAGAATTTGTCAGCTTGGGTTCTCTTTGATAAGAAGGT
TTATACCGTCTCTGATGTGTGTTGTTACTTCTTCCATCGAGGTTGGTGAGGCGGCTTCAGGAAAATCTATGGTGATTGTGTGCTTCCGTTTTCTTATCCT
TATCCTTGCATAGACTTTGTCGAAGGTTCCCTAAAATCTGGAGGGTCTTGTTTTAGCTTAGCTTGGTGTATGAATGTAATGTGATTAAGAAATCTTTGAT
TTTTTGGAGATTGTGTGGTCTTGAGGCTATGGTGGTTTATTGGTGGCTGTTTAGGATTCTCTGGTAGGATCCCTTGACCATGGTCTTTAGCCTTTTCTCT
TGTCCTCTTTGGTGACAAGTCGCTTATCGTGCTCTTTCAGTAAGGTCTAGTTGTCCGACCTTACGGTTCCCGCGGAAGATCAAGTTGGTGAGCCGTGTGA
TGGGAAACCTTCCCGCACGGTTCGGAGAGCACTGAATTAGAATGAGAGGTTCACCACCACATCATTGCATGCAAGGGGAGCTCGCTCGATTCGCAAATAG
GTCCGACTCGTAATTCACTTCTGACTCTGTGTTCGATAGCCCGACCGTAGTGATGTTAATTGTGGTTACATCCATAAGTAGCTTGGTCCATCTTTATTCC
ATTTCAAGGGCCACCAGAGGCACAAAGCAGGCGAATATCCGGCTCAGTGCGAAGCTTCGGTGGGGAGAAGTTATGCTGTTTCTTGGTTTTTAACCGATGG
GTTCTTCAGATTTCTTGGTAAGAGATTGTGGAGTTATAGCTCAATTGTGTACGGTCTCTGAGTAGTTGATTGTCAATCGTCTTCTTCGTCAGCTTCTCAG
GGTGTTAGATACGTTTTCTCGTGGCTTCCTGTGTTGAAGCTTGTTCTTGGGTGGCGTTGGCTCGTGGTTCCTGGTTTGGAACGTGTCTTGGAGCTCTTAT
CTCACCTCAGATAAATTGGATCGTCATCGCTTTCTCGTTCATTTCGGCTTCTGTTATCGTTCAGCTTCATATCTGTAGTGATTATTGGTATGTTCCAAGA
AGATTTCACTGATCACTTTTCTGTCTTGTTTGTGTGATGTCATGTGTTGTTGCCGTTTTATATTTGGCTCCGAAAAGTTATGTTTACCTTGTCAGCTTGT
GGGTC