Detailed information on CNT30541860


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 6e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316082Brassica napusCorylus avellana87.1755.7382.08530forward
CNT30313626Brassica napusCamelina sativa87.3446.0589.83531forward
CNT3079851Brassica napusBrassica juncea85.6950.6895.01521forward
CNT30202642Brassica napusHelianthus annuus40.6244.3484.62247forward
CNT30359492Brassica napusLactuca sativa85.3660.783.04519forward

Expression of CNT30541860

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

>peptide 2 (30 aa)
MGRSCLLGKASPLLLPMVPLRRLCNPLQLP*

>peptide 3 (86 aa)
SKVLQRSLTCDNGLNKESKHREHSQPSVLDLLHLQLGEGLWVGSKAQWVEAASWVKQVLCFSQWSLSGDSVTLYSSHEDHLSGPNG*

Sequence

>CNT30541860
CAGCAAGGTTCTCCAACGGTCCCTTACCTGTGACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCAC
CTTCAACTCGGCGAAGGCCTCTGGGTCGGTAGCAAGGCCCAATGGGTCGAAGCTGCCTCCTGGGTAAAGCAAGTCCTCTGCTTCTCCCAATGGTCCCTCT
CCGGCGACTCTGTAACCCTCTACAGCTCCCATGAGGATCACCTGAGTGGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTCGGGTTGCCCAAGT
AGTCAAGTCCTCCCTCGCTGAAGATTTGTGAGCCGGCCTTGAACCAAACCGCCTCTCCGAACTTGACTCCGTTCCTGGCCAACAACTCCGGGAAGACACA
GCCTAGGGCTCCAAGCATGGCCCATCTGCAGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGATCGGCTGAAAGGCCGGCGGTGTCCCAT
CCGTAGTCTCCTGGGAACTCCCCGGTAAGGCAGGGGAGGAGAGAGCCATTGTTGAAGAGGCCATTGACGTTTTTTTTTGTTTTTTTTATTTGGCGACTAA
CTTGTGAG