CANTATAdb - search

Detailed information on CNT30541591

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691950	Brassica napus	Oryza sativa	75.17	56.13	85.97	884	forward
CNT30546799	Brassica napus	Ipomoea triloba	73.64	70.52	86.03	866	forward
CNT30525464	Brassica napus	Phaseolus vulgaris	49.57	103.19	81.65	583	forward
CNT30629544	Brassica napus	Vigna unguiculata	33.67	52.38	84.6	396	forward
CNT3084148	Brassica napus	Vigna radiata	48.13	34.75	85.16	566	forward
CNT30246955	Brassica napus	Avena sativa	75.17	50.08	84.5	884	forward
CNT3077042	Brassica napus	Brassica juncea	99.06	96.76	95.97	1165	forward
CNT30614135	Brassica napus	Arabis alpina	64.63	48.72	92.24	760	forward
CNT30603820	Brassica napus	Oryza punctata	74.57	81.28	85.97	877	forward
CNT30176122	Brassica napus	Vigna angularis	72.19	75	83.39	849	forward

Expression of CNT30541591

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTIGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENLTAMWEVWQSRTGA*

>peptide 2 (93 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPEGAKVTTIPGLSIPVSTRPTGTVPIPPIL*

Sequence

>CNT30541591
TTAACCGCAGGAACGACATACCATATTCATTATAAAGAGAGCATCCAAAATAGTTCAGAATCCGAAAGCAAAACAAAGTAAAAAAGAAGGAAGCTAGAGT
AATGAGTAGCTTCACCACCTCCGATCAAGAACCTAGTTAAGTGAACAAAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAGACAAGCGGCCAAATACA
AAACTAATGTAACCAAAAAACTAAAATTGTCTTTCCATTCAACTGCGGATGATTGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGC
CTTGGTCACCTTGGCTCCGGTTGGGTCCTTCTTGTCAACGCTCTTGATGACGCCGACTGCAACAGTCTGCCTCATGTCCCTCACGGCGAAACGTCCAAGA
GGTGGGTACTCAGAGAAGGTCTCAACAACCATTGGCTTGGTTGGAGTCATCTTCACCATACCAGCATCACCATTCTTCAAGAACTTGGGCTCCTTCTCGA
TCTCTTTACCAGAACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACGGCAATGTGGGAAGTGTGGCAGTCAAGAACTGGTGCGTAACCGTTACC
AATCTGACCGGGGTGGTTCATGATGATGACCTGGGAAGTGAAGTTAGCAGCACCCTTAGCTGGGTCATCTTTGGAGTTGGATGCAACGTACCCACGCTTG
AGATCCTTGACAGCAACATTCTTGACATTGAATCCGACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCTCAACAGACTTAACCTCAG
TGGTCAACCCTGAAGGAGCAAAGGTGACAACCATACCAGGCTTGAGCATACCGGTTTCAACACGACCCACTGGCACCGTTCCAATTCCACCAATCTTGTA
GACATCCTGAAGTGGAAGACGGAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGTGCCTCAAGGAGAGTTGGTCCCTTGTACCAGTCA
AGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCGAAACCAGAGATGGGGACGAATGGGATTTTGTCCGGGTTGTACCCAACCTTCTTCAAGTAGGAAG
ACACCTCCTTGATAATCTCATCGTACCTAGCCTTGGAGTACTTAGGGGTAGTAGCATCCATCTGCAACAAGAAAAC