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Detailed information on CNT30541492


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700914Brassica napusQuercus lobata34.3571.4585.75428forward
CNT30376781Brassica napusArabidopsis thaliana32.6675.3788.45407forward
CNT30616366Brassica napusSesamum indicum34.1950.1287.56426forward
CNT30729106Brassica napusCorchorus capsularis34.0354.3685.38424forward
CNT30506303Brassica napusNicotiana attenuata37.6457.4185.29469forward
CNT30234332Brassica napusBrassica oleracea95.9910097.241196forward
CNT3074281Brassica napusBrassica juncea58.7561.6793.58732forward
CNT30260763Brassica napusBrassica rapa55.54100.4491.33692forward

Expression of CNT30541492

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVIVFPVRVLTKICMPPRSLRTK*

>peptide 2 (36 aa)
MPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICI*

>peptide 3 (44 aa)
QEISKGHNIKQQRLLSPDNSQSNHTGLASKRHNFYTRRKHNRET*

Sequence

>CNT30541492
CAGGAGATAAGCAAAGGGCACAACATTAAACAGCAACGACTCTTGTCACCTGATAATTCTCAATCGAACCATACTGGACTAGCTAGCAAACGGCACAACT
TTTATACACGTAGAAAGCACAATAGGGAAACATAAAGAGCAACGACTATATTATAATATATTTCACCTCCGATTTGGTTCATAACGGAAGAGAAAAACAA
GGACGCAAAGCGAGTTCATCAATTATTCATAAGGGGCTTTATAAGACCTCAAAACATAAACCATAAGAAGTATTTAAAAGAAACGCAGAGACTGACTTTT
GAACCAACAAAGGACAGGAGTTTTAGAAACCTCCACGGAGACGGAGGACTAAATGTAAAGTGGACTCCTTCTGAATATTGTAGTCAGCAAGGGTGCGACC
ATCCTCCAACTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTATCGATGGTGTCAGAG
CTCTCCACCTCCAAAGTGATCGTCTTTCCGGTAAGGGTCTTGACGAAGATCTGCATGCCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCT
GGATGTTGTAGTCAGCCAAGGTTCTCCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTT
GGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAATTCACAAACA
GCAGCGATCAATTCCGAAAACAATCACTAATCACAGTATAAACATTAACCAAGGATAATAAGTCAACTAATTAAATAGAATCAAATCATCAACGAACCAT
TCAGATCAAATTGCGAACAGCAATCACAGATCCACGAATTGATACAAAATCAATTAGATGAAAATCACAGATCGACGCTTATCAACATAGATCCACGACT
ACTAACAATCACTAATCAGATCCTAACAAGAAACTGACCGTAGATCAACAAAGGAAACAACAGATCGACGCGTAACAACGAAGATGAACACACAAGACGA
TTTTTAACGACGAATCAAAACTCAACGAGTAGAGAACAGCTCGCGATTCAAACGAAACAACTAATCGAAGAAGAGATCAAGAAGCTCACCTTGATCGAAG
CTTGAGATTGAGATAGAATTTGATTATGATTATCGAATTTCGAAAC