« Back to Brassica napus search


Detailed information on CNT30541477


BLAST search results

BLAST vs Swiss-Prot:
sp|P56760|ATPH_ARATH, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3095993Brassica napusSolanum tuberosum20.455.287.5208forward

Expression of CNT30541477

Peptides detected in this lncRNA

>peptide 1 (53 aa)
FCLRLSRDTFDSLTRSCTLTNPRSNRSKPNSQPSSNNRSSRNQWIHDKFLTPK*

>peptide 2 (36 aa)
MTGIGTTKGTKETRTTTTNSSANIFPKIENSVIGVL*

Sequence

>CNT30541477
CTTCTGCCTCAGGTTGTCTCGCGATACCTTCGACAGCTTGACCCGCAGCTGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCAACAGCCAACCC
AGCAGCAATAACCGAAGCAGCAGAAACCAGTGGATTCATGATAAGTTCCTCACACCAAAATAAAGAAATAGTTAATGATACAATCATCCAACGACTTAGG
ACTTAATTATAATTAAGTCATCGCTAAGATTCATCCAGCCAAAATAACCAAAAACTTGATAAGAATTACTTTGATATTAGTTCCTATCCACGGGATTTTG
AAAAATGCATAATATATATATATACGACTTTTTTATGCCGTTTCTTTTTTGTGAACCATTCTTTTCTTTTAATTCTTCGTTCTTTTTTTGATCGTTTTTT
TCAGCCAATTCACAGATAAAAAGTAAGAACTTATAATCGAATCGTTATCTAAATAGAAATTCACAAAAATAGTGGGGCAGATTATATAGATCTTTAACTT
ATATATACCTAGTCAATATCAAATATGACATATACAAGTGTTTCTTACATAACGTAAACCAACTATTCGATAATTGGGCTAACCTAAATTTGAAAAAAAA
AAATAGTTAATGATGACCCTCCATGGATTCACCTATATAAGCCGCAGCTAAAGTGGCAAAAATGAGAGCTTGAATCCCGCTTGTAAATAATCCAAGGAAC
ATGACAGGTATAGGAACCACTAAAGGTACTAAAGAAACAAGAACAACAACTACTAATTCATCGGCTAATATATTTCCGAAAATCGAAAACTCAGTGATAG
GGGTTTTGTAAAATCTTCTAAGATGTTAATGGGTAAAAGAATTGGAGTTGGTTGAATGTATTTACTGAAATACCCTAATCCTTTTTTGCTAAGACCCGCA
TAAAAATATGCTACTGATGTGAGTAAAGCTAAAGCAACCGTCGTATTTATATCATTCGTTGGTGCTGCTAACTCCCCTTGAGGTAACTGGATAATTTTCC
ACGGTAAAAGGGCTCCT