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Detailed information on CNT30541469


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLW8|RR8_NASOF, E-value = 4e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550215Brassica napusIpomoea triloba25.958.6782.87397forward
CNT30493471Brassica napusOlea europaea6.3424.6890.7297forward
CNT30237791Brassica napusBrassica oleracea14.7194.5494.67225forward
CNT30511668Brassica napusSolanum lycopersicum9.1546.5188.57140forward
CNT30556066Brassica napusOryza glaberrima7.7821.0286.55119forward
CNT30147499Brassica napusMedicago truncatula26.826.0282.93410forward
CNT30310337Brassica napusCamelina sativa77.1270.6290.681180forward
CNT3083474Brassica napusBrassica juncea75.3634.5399.571153forward
CNT30450248Brassica napusSaccharum spontaneum4.8436.2789.1974forward
CNT30202977Brassica napusHelianthus annuus10.3329.9288.61158forward
CNT30351320Brassica napusEragrostis tef7.975082.79122forward
CNT30364284Brassica napusSorghum bicolor3.8623.6991.5359reverse complement
CNT30434619Brassica napusPapaver somniferum11.2425.6787.79172forward
CNT3059026Brassica napusAmborella trichopoda26.3428.0880.4403forward
CNT30576477Brassica napusOryza barthii7.3224.488.39112forward

Expression of CNT30541469

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MLSVMLVDPIRTVPFLFMSAFRIEVIISAIVSFPMIS*

>peptide 2 (62 aa)
NSISCCGLSSKRCSSSCTPESTSTRGGPRNHPTPYICNGHNGIVETCLNMNNSLWYSTYIFT*

Sequence

>CNT30541469
CGAATAGCATTTCCTGCTGCGGTTTGAGCAGCAAAAGGTGTTCCTCTTCTTGTACCCCTGAATCCACAAGTACCCGCGGAGGACCAAGAAATCACCCGAC
CCCGTACATCTGTAACGGTCACAATGGTATTGTTGAAACTTGCTTGAACATGAATAACTCCCTTTGGTATTCTACGTACATTTTTACGTGAACCACTACG
GGTATTTTTACGTGAACCAATTCTTAATATAGGTTTTGCCATATTTTTTCATTTCACAAGAAATATATGGATATATCCATTTCATGTCAAAACGGACCTT
TTTTTTACTAGCTCCTTGGAAGTGCCTTTTCCTTTAGTAAGATTATCCTTGTCTTTGTTTATGCCTCGGGTTGGAACAAATTACTATAATTCGTCCCCTC
CTACGGATTAGCCGACACTTTTCACAAATTTTACGAACGGAAGCCCTTATTTTCATAGTTGTTATTCCTTAATTCTCTTAATATACTTATTGTTGGACGA
AAAAAAGGTTTCTTGATATTTTTGAATCTTGAATTGTATCTTCGTGAAAGGAATGTTGAATTTCAAAAAACCACTGACTTATTTGAATCCTTGTTATGGA
GTCTAGAAAGTGGCTGTTCCCCGATTAACTTAATACCTAAGAACTTACTAAAATTTTTACCCCCCTTTTTCTCCTATAGGTATACCTATACAAAAATATG
TCGAATCCTTTCAGAAGCATGACCTAAAATAAAAAAAATCTTTAGTATCTAAACAAAATCGAACCATACCGTTCGGAAGTGATTCATAAAGAAAACTTTC
ATTAATTCATTTTTTTCTTTAATTTCATTCGGGGTAAAAAATTCTAAACTTTTTTAGCAGGGGTGGTATTACACAACCCCCCCCCCTTTTTTTTCACAAA
TGCTAAGTTCCGGATATCCAATTTTGATATTAGAAGGATTACCATATATAACACAAAATTTCTCCGCCGATTCTTTTTAGTCGAGCTTCTCGATCTGTCA
TTATACCTTGAGAAGTTGAAAGGATTACAATTCCTATTCCGCCTAAAATTCGTGGAATTCGTTGAGAGTTAGAATAGATTCGTAGACCCGGTCGGCTTAT
TCTCTTTAAATTTAAAATCGTTTTATAGGATTCTTTCTTATTTCGTCTATGTCTTAGGGTTAAAATCAAAAAATATTGATTGTTTTCGCGATGTTTCCTT
ACGTTTTCGATAAAACCCTCTCGTAAAAGTATTTTAACAATGCTTTCGGTGATGTTAGTCGATCCTATCCGAACTGTTCCTTTTCTATTCATGTCAGCAT
TTCGTATAGAGGTTATTATATCAGCAATAGTGTCTTTCCCCATGATAAGTTAAAATTCCTTAATTGTTCTATAATTTTGATATAATCAACATGTTATTTT
TCTTTTATTTATATAAAAATAGAGACGAATTATATATTAATATATGAATTCAATTATTAATATATAAAATTATTAAGGGTATATGCGTGATACACAATCT
ATTAATTATAATTAATTTGATTTCAATACC