Detailed information on CNT30541466


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL94|ATPI_LEPVR, E-value = 1e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616942Brassica napusSesamum indicum15.3729.0485.34307forward
CNT30272039Brassica napusChenopodium quinoa14.5740.5989.35291forward

Expression of CNT30541466

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MTGIGTTKGTKETRTTTTNSSANIFPKSRKLSDRGFVKSSKMLMGKRIGVG*

>peptide 2 (52 aa)
MMITISGNPVIYLIPPRYVSKRDNCLFNTAASLFGRRLNPSVFCSVLKSLNL*

>peptide 3 (52 aa)
MNSRTNSKKFWPPVGMVCGLRTARAAEPNKIAITTQEVIRTCAWTWNPPICQ*

>peptide 4 (56 aa)
YFSFCLRLSRDTFDSLTRSCTLTNPRSNRSKPNSQPSSNNRSSRNQWIHDKFLTPK*

>peptide 5 (30 aa)
MIKHSYCPLTEIRTLNYFDSRPPLFFYLFT*

>peptide 6 (47 aa)
MNRIEAIASSFAGIEISARSGLQFVSIKEMVGIPKVIHSRRAVYSSC*

Sequence

>CNT30541466
TATTTTTCCTTCTGCCTCAGGTTGTCTCGCGATACCTTCGACAGCTTGACCCGCAGCTGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCAACA
GCCAACCCAGCAGCAATAACCGAAGCAGCAGAAACCAGTGGATTCATGATAAGTTCCTCACACCAAAATAAAGAAATAGTTAATGATACAATCATCCAAC
GACTTAGGACTTAATTATAATTAAGTCATCGCTAAGATTCATCCAGCCAAAATAACCAAAAACTTGATAAGAATTACTTTGATATTAGTTCCTATCCACG
GGATTTTGAAAAATGCATAATATATATATATACGACTTTTTTATGCCGTTTCTTTTTTGTGAACCATTCTTTTCTTTTAATTCTTCGTTCTTTTTTTGAT
CGTTTTTTTCAGCCAATTCACAGATAAAAAGTAAGAACTTATAATCGAATCGTTATCTAAATAGAAATTCACAAAAATAGTGGGGCAGATTATATAGATC
TTTAACTTATATATACCTAGTCAATATCAAATATGACATATACAAGTGTTTCTTACATAACGTAAACCAACTATTCGATAATTGGGCTAACCTAAATTTG
AAAAAAAAAAATAGTTAATGATGACCCTCCATGGATTCACCTATATAAGCCGCAGCTAAAGTGGCAAAAATGAGAGCTTGAATCCCGCTTGTAAATAATC
CAAGGAACATGACAGGTATAGGAACCACTAAAGGTACTAAAGAAACAAGAACAACAACTACTAATTCATCGGCTAATATATTTCCGAAAAGTCGAAAACT
CAGTGATAGGGGTTTTGTAAAATCTTCTAAGATGTTAATGGGTAAAAGAATTGGAGTTGGTTGAATGTATTTACTGAAATACCCTAATCCTTTTTTGCTA
AGACCCGCATAAAAATATGCTACTGATGTGAGTAAAGCTAAAGCAACCGTCGTATTTATATCATTCGTTGGTGCTGCTAACTCCCCTTGAGGTAACTGGA
TAATTTTCCACGGTAAAAGGGCTCCTGACCAGTTAGAAACAAAAATAAATAAAAACAGGGTTCCAATAAAGGGAACCCATGGACCGTATTCTTCTCCAAT
CTGGGTTTGACTCACATCTCGAATGAATTCAAGGACAAATTCAAAGAAGTTTTGGCCGCCAGTTGGAATGGTTTGTGGATTGCGAACCGCTAGAGCTGCG
GAACCTAATAAGATAGCAATTACAACCCAAGAAGTAATAAGGACTTGCGCATGGACTTGGAACCCCCCTATTTGCCAATAGAAATGTTGGCCTACTTCTA
CACCAGATATCTCATATAACCCTTCTTTTATTAGTGTATTGATGGAACATGATAAAACATTCATATTGCCCTCTGACAGAAATAAGAACTTTAAATTATT
TTGATTCAAGACCCCCCCTTTTTTTTTACTTATTTACTTGAATTTTTATTTTAGTTTTGGATACCAACTAAACGAATCACACAATATACCCAGTTTTTTA
TCTCTTTTTCTTTTGTATGATTCAGGAATAGTAACCGATTTTATAAATCGAAATACAGGGAGCCCCTCCCTCAAAAAAAATTGATTTATTTATCTTATTA
TTAATCAAGAATTTTGTATATAGCTAGAACGACCCTCACAAATTGCGAATACTAATTTGTTAAGAATGAATCGAATTGAAGCTATAGCGTCATCATTTGC
TGGAATAGAAATATCCGCGAGATCGGGATTACAATTTGTATCGATTAAAGAAATGGTTGGAATTCCCAAAGTTATACATTCTCGAAGAGCCGTATATTCT
TCTTGCTGATCGATGATGATTACAATATCAGGCAATCCCGTCATATATTTAATCCCGCCTAGATATGTTTCCAAGCGAGATAATTGTCTCTTCAACACAG
CTGCATCCCTTTTCGGAAGACGGTTGAATCCCTCTGTCTTTTGTTCAGTTCTCAAGTCCCTAAACTTATGAATCTTTTTTCTGTAGTAGACCAATTT