CANTATAdb - search

Detailed information on CNT30541457

BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL94|ATPI_LEPVR, E-value = 1e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30617713	Brassica napus	Sesamum indicum	22.92	18.72	90.46	367	forward

Expression of CNT30541457

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MNSRTNSKKFWPPVGMVCGLRTARAAEPNKIAITTQEVIRTCAWTWNPPICQ*

>peptide 2 (70 aa)
YFSFCLRLSRDTFDSLTRSCTLTNPRSNRSKPNSQPSSNNRSSRNHGFMISSSHQNKEIVNDTIIQRLRT*

>peptide 3 (30 aa)
MIKHSYCPLTEIRTLNYFDSRPPLFFYLFT*

>peptide 4 (51 aa)
MTGIGTTKGTKETRTTTTNSSANIFPKSRKLSDRGFVKSSKMLMGKRIGVG*

Sequence

>CNT30541457
TATTTTTCCTTCTGCCTCAGGTTGTCTCGCGATACCTTCGACAGCTTGACCCGCAGCTGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCCAACA
GCCAACCCAGCAGCAATAACCGAAGCAGCAGAAACCATGGATTCATGATAAGTTCCTCACACCAAAATAAAGAAATAGTTAATGATACAATCATCCAACG
ACTTAGGACTTAATTATAATTAAGTCATCGCTAAGATTCATCCAGCCAAAATAACCAAAAACTTGATAAGAATTACTTTGATATTAGTTCCTATCCACGG
GATTTTGAAAAATGCATAATATATATATATACGACTTTTTTATGCCGTTTCTTTTTTGTGAACCATTCTTTTCTTTTAATTCTTCGTTCTTTTTTTGATC
GTTTTTTTCAGCCAATTCACAGATAAAAAGTAAGAACTTATAATCGAATCGTTATCTAAATAGAAATTCACAAAAATAGTGGGGCAGATTATATAGATCT
TTAACTTATATATACCTAGTCAATATCAAATATGACATATACAAGTGTTTCTTACATAACGTAAACCAACTATTCGATAATTGGGCTAACCTAAATTTGA
AAAAAAAAAATATTAATGATGACCCTCCATGGATTCACCTATATAAGCCGCAGCTAAAGTGGCAAAAATGAGAGCTTGAATCCCGCTTGTAAATAATCCA
AGGAACATGACAGGTATAGGAACCACTAAAGGTACTAAAGAAACAAGAACAACAACTACTAATTCATCGGCTAATATATTTCCGAAAAGTCGAAAACTCA
GTGATAGGGGTTTTGTAAAATCTTCTAAGATGTTAATGGGTAAAAGAATTGGAGTTGGTTGAATGTATTTACTGAAATACCCTAATCCTTTTTTGCTAAG
ACCCGCATAAAAATATGCTACTGATGTGAGTAAAGCTAAAGCAACCGTCGTATTTATATCATTCGTTGGTGCTGCTAACTCCCCTTGAGGTAACTGGATA
ATTTTCCACGGTAAAAGGGCTCCTGACCAGTTAGAAACAAAAATAAATAAAAACAGGGTTCCAATAAAGGGAACCCATGGACCGTATTCTTCTCCAATCT
GGGTTTGACTCACATCTCGAATGAATTCAAGGACAAATTCAAAGAAGTTTTGGCCGCCAGTTGGAATGGTTTGTGGATTGCGAACCGCTAGAGCTGCGGA
ACCTAATAAGATAGCAATTACAACCCAAGAAGTAATAAGGACTTGCGCATGGACTTGGAACCCCCCTATTTGCCAATAGAAATGTTGGCCTACTTCTACA
CCAGATATCTCATATAACCCTTCTTTTATTAGTGTATTGATGGAACATGATAAAACATTCATATTGCCCTCTGACAGAAATAAGAACTTTAAATTATTTT
GATTCAAGACCCCCCCTTTTTTTTTACTTATTTACTTGAATTTTTATTTTAGTTTTGGATACCAACTAAACGAATCACACAATATACCCAGTTTTTTATC
TCTTTTTCTTTTGTATGATTCAGGAATAGTAACCGATTTTATAAATCGAAATACAGGGAGCCCCTCCCTCAAAAAAAATTGATTTATTTATCTTATTATT
A