Detailed information on CNT30541456


BLAST search results

BLAST vs Swiss-Prot:
sp|B2Y1V6|RPOC1_WELMI, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202287Brassica napusPisum sativum27.5629.5591.02245forward
CNT3045209Brassica napusPrunus dulcis11.0233.7989.898reverse complement
CNT30220823Brassica napusHordeum vulgare35.19.8786.22312forward
CNT3086010Brassica napusVigna radiata20.3615.5884.53181forward
CNT30314046Brassica napusCamelina sativa101.2423.4893.78900forward
CNT3082978Brassica napusBrassica juncea10010.9599.66889forward
CNT3057109Brassica napusAmborella trichopoda24.529.7288.53218forward
CNT30150636Brassica napusBrachypodium distachyon19.1274.5684.71170forward
CNT30116701Brassica napusOryza nivara16.264.8687.5144forward

Expression of CNT30541456

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGFDNEFESMIAKLPFLDLDFLGQELCPS*

>peptide 2 (34 aa)
MDYICLHKYLDECRSLIHRVQSAYLESVQKWDLQ*

>peptide 3 (43 aa)
MTNCGSNIYTKSLFFYTSYYQIVCINLMIVTKRFIVNFDRNFF*

Sequence

>CNT30541456
GATTGGCCCGTTCCGCCATAAGTACCTCCATATTCTGCTGAATGGGATTCGACAATGAGTTTGAGTCAATGATTGCAAAACTTCCTTTTCTCGATCTTGA
TTTTTTAGGTCAGGAACTATGTCCGAGTTGACTCGGAGAGGTCCGAATTCACACGGGTGTCCTATAATTCTTTTTTTATGAATACCATATTATTAGGTAT
CATATGAACAAGCTTGAGAAAAACCTTGTATAGCTTCCTCGATTTCTCGATAAAAAGAAATATGACCAACTGTGGTTCGAATATATATACAAAAAGTTTG
TTTTTTTACACTTCTTACTATCAGATAGTGTGCATAAATCTCATGATAGTTACCAAAAGATTCATAGTGAACTTCGATAGGAACTTCTTTTGAAGCAATA
ACGCGTTGATCTAATTGCCACCGAAGCCACAAAGGACTATCTAAATTGATTCTTTTCTGCCGATAAGCTCCAATTGCATCATAGGAATTGCAAAAAAAGG
GGTTCTTTCATATACTTATAGTTTGTTTCGTAAATTCTTTCATTTTGATAGTTTTTTCGATTACATGGATTATATCTGTTTGCACAAATACCTCGACGAG
TGCCGCTCGTTAATACATAGAGTCCAATCAGCATATCTTGAGTCGGTACAGAAATGGGATCTCCAATAGCTGGAGATAAGAGATTCATATGAGAAAACAT
AAGTAAACGAGCCTCTGCTTGAGCTTCTAAAGATAAAGGCACATGAACAGCCATTTGATCCCCATCAAAGTCTGCATTGAACCCCTTACAAACTAATGGA
TGTAAACAAATAGTGCGTCCTTCCACTAAAATGGGTTGGAATGACTGTATGCCTAATCTATGTAGAGTAGGTGCTCTATTCAGTAATAC