« Back to Brassica napus search


Detailed information on CNT30541452


BLAST search results

BLAST vs Swiss-Prot:
sp|P48686|RBL_BRAOL, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Brassica napusOryza sativa85.3630.8186.861423forward
CNT30201083Brassica napusPisum sativum75.7659.1689.791263forward
CNT30181907Brassica napusSecale cereale85.8488.9986.791431forward
CNT30290424Brassica napusTriticum aestivum85.8489.4986.861431forward
CNT30225281Brassica napusHordeum vulgare19.3896.4289.78323forward
CNT30565170Brassica napusActinidia chinensis59.5186.8792.44992forward
CNT30554212Brassica napusOryza glaberrima67.9130.0187.371132forward
CNT30434683Brassica napusAegilops tauschii26.8775.2985.49448forward
CNT3060115Brassica napusArabidopsis lyrata73.4351.6297.141224forward
CNT3017995Brassica napusZea mays67.9173.2786.841132forward
CNT30606537Brassica napusGossypium raimondii42.7142.3687.08712forward
CNT30682029Brassica napusTriticum urartu47.9975.8387.12800forward
CNT30355674Brassica napusLactuca sativa36.6582.7991.98611forward
CNT3058691Brassica napusAmborella trichopoda20.0474.7287.72334forward
CNT30100001Brassica napusOryza rufipogon15.1898.0686.17253forward

Expression of CNT30541452

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MVGKLNVISFHTSQAAASSGLHLQASRIISLPSTARSRPSLRACTHASRATRLATAPGAFPQGWPKVPPPNCSTESSPKISVKAGICQT*

>peptide 2 (39 aa)
MHYDRNSQFSGKYSSFHHFFACTRSSIQIMSFDFTCFSL*

Sequence

>CNT30541452
ATTGAGCCGAGTTTAATTGCAATTAAACTAATAAAACGGACGTGAATTACTAATCTAATTTCTAGTCTTGGCCATCTAATTTATCGATGGTTGGGAAGTT
AAATGTGATCTCCTTCCATACTTCACAAGCAGCAGCTAGTTCAGGACTCCATTTGCAAGCCTCACGGATAATTTCATTACCCTCGACTGCAAGATCACGT
CCCTCATTACGAGCTTGTACACATGCTTCTAGAGCTACTCGGTTAGCTACGGCACCCGGTGCATTTCCCCAAGGGTGGCCTAAAGTTCCGCCACCAAATT
GTAGTACGGAATCATCTCCAAAGATCTCGGTCAAAGCAGGCATATGCCAAACGTGAATACCCCCTGAAGCCACAGGTAGAACACCTGGTAGTGAGACCCA
ATCTTGAGTGAAAAAGATACCACGACTTCGGTCTTTTTCAACATAATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCCCTGTCTCCTTCAAGT
TTACCTACTACTGTACCCGCGTGAACATGATCTCCACCCGATAGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACCATGATTCTTCTGTCTATCAA
TAACAGCGTGCATTGCACGGTGGATGTGAAGAAGTAGGCCATTATCTCGGCAATAATGAGCCAAACTAGTATTTGCGGTGAATCCCCCTGTTAAGTAGTC
ATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATATAGCTCTTTTCATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAATAATGTCCTTTGATT
TCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGAGAGTTCACATTCTCATCATCTT
TGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCATAGTTCTTCGCGGATAACCCCAACTTAGGTTTAATAGTACATCCTAATAGGGG
ACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAGGTGGTCCCTGGAAAGTTTTAGTATAAGCCGGAGGGATTCGCAGATCCTCTAGA
CGTAGAGCAGCCAGGGCTTTGAACCCAAATACGTTACCCACAATTGAGGTAAACATGTTAGTAACAGACCCTTCTTCAAAAAGGTCTAATGGGTAAGCTA
CATACGCAATAAATTGAGTTTCTTCTCCTGGAACGGGCTCGATGTGGTAGCATCGTCCTTTGTAACGGTCAAGGCTGGTAAGCCCATCGGTCCACACAGT
TGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGCCCCTGCTTCTTCAGGTGGAACTCCGGGTTGAGGAGTTACTCGGAATGCTGCCAAGATATCA
GTATCCTTGGTTTCATATTCAGGAGTATAATAATTCAATTTATACTCTTTAACACCAGCTTTGAATCCAACACTTGCTTTAGTCTCTGTTTGTGGTGACA
TAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACAAAACAACAAGGTCTACTCGACATAAATTAGGAATAGATTTAATTAACCTTTT
TCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTATTAGACCATGATATTTGAT