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Detailed information on CNT30541450


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL94|ATPI_LEPVR, E-value = 3e-153

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Brassica napusOryza sativa25.1212.4886.4706forward
CNT30317837Brassica napusCorylus avellana17.7547.4386.17499forward
CNT30703171Brassica napusQuercus lobata27.896.5888.78784forward
CNT3021394Brassica napusCitrullus lanatus21.9998.5691.26618forward
CNT30198909Brassica napusPisum sativum18.5323.0989.44521forward
CNT30486613Brassica napusOlea europaea2.724.3685.5376forward
CNT30505351Brassica napusNicotiana attenuata26.8221.6988.99754forward
CNT30291829Brassica napusTriticum aestivum25.1217.9185.69706forward
CNT30226738Brassica napusHordeum vulgare11.132485.62313forward
CNT3086153Brassica napusVigna radiata6.5883.7183.78185reverse complement
CNT30238613Brassica napusBrassica oleracea12.4967.6397.72351forward
CNT30511101Brassica napusSolanum lycopersicum26.8661.8385.56755forward
CNT30554216Brassica napusOryza glaberrima1877.6183506forward
CNT30172770Brassica napusTrifolium pratense15.4785.2985.29435forward
CNT30660677Brassica napusTriticum dicoccoides1940.0381.84534forward
CNT3017990Brassica napusZea mays25.1221.3485.84706forward
CNT30609661Brassica napusGossypium raimondii12.2720.0787.25345forward
CNT30232563Brassica napusAnanas comosus27.522.5686.93773forward
CNT30626489Brassica napusDaucus carota7.3623.694.69207forward
CNT3057337Brassica napusAmborella trichopoda26.8220.2382.63754forward

Expression of CNT30541450

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MNSRTNSKKFWPPVGMVCGLRTARAAEPNKIAITTQEVIRTCAWTWNPPICQ*

>peptide 2 (51 aa)
MTGIGTTKGTKETRTTTTNSSANIFPKSRKLSDRGFVKSSKMLMGKRIGVG*

>peptide 3 (30 aa)
MIKHSYCPLTEIRTLNYFDSRPPLFFYLFT*

Sequence

>CNT30541450
ATGAGTATTGTCCTAATTCTTTTTTGGAAGAAAAAAAAAAATAATGCCTATCATAATCGTAAGGAAAGAGCTAATCAGTAATTTCTTTCATCGTACCAAA
CATACCAATATTTGCATTAATAGTACGTAAATGTAACTCATTACTCAAACAACTATTTAGGGTTCCTATAGCTCCCTGTAAAGCTTGTTGGAAAACCCGT
TCACGGACTTGATTAATTGTTCTTTGTTGCTCAAAAAGAATGGTTTCGTTTTTGTAATTTTCTAATTGTTTCAAAGTCCTAGAAGTTGAATTAATCAAAT
TTACTTTTTCTCGTTCGATTTCAGAGTATCCATTTACGCGAAACTGATCCGCCTCCATTTCTACTTTACGCAGGCGAGCTCGGGCGTTTTCTAATTGTTG
AATAGCTCCTTCACGTAGTTCTTCTGAATTTCGAATAGTATTTAATATCCTCTGCTTTCGGTTATCTAATAAATCATTTAACACTCCCTTTCCAAAAAAG
ATCAATACACCGAAGACTACACTTAGATTTATTGGATTTGTTGCTAAAATATCGGTATTAAACCCGAAACTCCCGGCGGATGGCCAGTGACCCAATAAAC
GAAAGAATCGGTTAAATTTTTCATATAATCTCCTCTTCTAGCTAAACTATAAAAAAAAAGAACTCTGTCCTTTTTTTTTTTTTTTCTTTGTTTTTTTGAA
TAAAAAGAAAATTTCGTTTAATAATTTATAATTTAATTTACCTATTTGGATATTTATAAACAGAATCAAAAACCTATTCTATTTACAAATTTATTTTCCA
AAAATTTTTAATTTTCAATAATAATAATGAGACTTAATTAAAATTAAGCTAGAATTTGAGACCAAGTTTTATATCAATTTTAAAAAACCTAAACCTCCTT
TTTGCGCAACACTCCTTAAAAAAAAATTTCCATTAAACTAAAAAGAATAAGGGGAAGGAAGAAAGCGAATCGATGTGTTAATTCCCCATCCTCAAATTAG
TCCTTCCCAAGGGTTGTTGTCTCAATGAATAATTGTAGGAGTGAAATCTTGATAGAATAAAAAAAACTACGAAAAAAAAAATTCCTAATTTTATTATTTC
TAGGATTAAACAAAAGGATTCGCAAATAAAAGCGCTAATGCTACAACTAGGCCATAAATTGTTAAAGCTTCCATAAAAGCCAAACTAAGCAATAAAGTAC
CTCGTATTTTTCCTTCTGCCTCAGGTTGTCTCGCGATACCTTCGACAGCTTGACCCGCAGCTGTACCTTGACCAACCCCAGGTCCAATAGAAGCAAGCCC
AACAGCCAACCCAGCAGCAATAACCGAAGCAGCAGAAACCAGTGGATTCATGATAAGTTCCTCACACCAAAATAAAGAAATAGTTAATGATACAATCATC
CAACGACTTAGGACTTAATTATAATTAAGTCATCGCTAAGATTCATCCAGCCAAAATAACCAAAAACTTGATAAGAATTACTTTGATATTAGTTCCTATC
CACGGGATTTTGAAAAATGCATAATATATATATATACGACTTTTTTATGCCGTTTCTTTTTTGTGAACCATTCTTTTCTTTTAATTCTTCGTTCTTTTTT
TGATCGTTTTTTTCAGCCAATTCACAGATAAAAAGTAAGAACTTATAATCGAATCGTTATCTAAATAGAAATTCACAAAAATAGTGGGGCAGATTATATA
GATCTTTAACTTATATATACCTAGTCAATATCAAATATGACATATACAAGTGTTTCTTACATAACGTAAACCAACTATTCGATAATTGGGCTAACCTAAA
TTTGAAAAAAAAAAATAGTTAATGATGACCCTCCATGGATTCACCTATATAAGCCGCAGCTAAAGTGGCAAAAATGAGAGCTTGAATCCCGCTTGTAAAT
AATCCAAGGAACATGACAGGTATAGGAACCACTAAAGGTACTAAAGAAACAAGAACAACAACTACTAATTCATCGGCTAATATATTTCCGAAAAGTCGAA
AACTCAGTGATAGGGGTTTTGTAAAATCTTCTAAGATGTTAATGGGTAAAAGAATTGGAGTTGGTTGAATGTATTTACTGAAATACCCTAATCCTTTTTT
GCTAAGACCCGCATAAAAATATGCTACTGATGTGAGTAAAGCTAAAGCAACCGTCGTATTTATATCATTCGTTGGTGCTGCTAACTCCCCTTGAGGTAAC
TGGATAATTTTCCACGGTAAAAGGGCTCCTGACCAGTTAGAAACAAAAATAAATAAAAACAGGGTTCCAATAAAGGGAACCCATGGACCGTATTCTTCTC
CAATCTGGGTTTGACTCACATCTCGAATGAATTCAAGGACAAATTCAAAGAAGTTTTGGCCGCCAGTTGGAATGGTTTGTGGATTGCGAACCGCTAGAGC
TGCGGAACCTAATAAGATAGCAATTACAACCCAAGAAGTAATAAGGACTTGCGCATGGACTTGGAACCCCCCTATTTGCCAATAGAAATGTTGGCCTACT
TCTACACCAGATATCTCATATAACCCTTCTTTTATTAGTGTATTGATGGAACATGATAAAACATTCATATTGCCCTCTGACAGAAATAAGAACTTTAAAT
TATTTTGATTCAAGACCCCCCCTTTTTTTTTACTTATTTACTTGAATTTTTATTTTAGTTTTGGATACCAACTAAACGAATCACACAATATACCCAGTTT
TTTATCTCTTTTTCTTTTGTATGATTCAGGAATAGTAACCGATTTTATAAATCGAAATACAGGGAGCCCCTCCCTCAAAAAAAATTGATTTATTTATCTT
ATTATTAATCA