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Detailed information on CNT3054138


BLAST search results

BLAST vs Swiss-Prot:
sp|P33624|TBA2_ANEPH, E-value = 6e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Amborella trichopodaSetaria italica44.5825.7179.2226forward
CNT30516889Amborella trichopodaJuglans regia22.0918.5184.82112forward
CNT30377201Amborella trichopodaArabidopsis thaliana60.5553.6784.36307forward
CNT30728062Amborella trichopodaCorchorus capsularis64.137.3181.54325forward
CNT30486254Amborella trichopodaOlea europaea33.3344.1384.02169forward
CNT30708222Amborella trichopodaGlycine max56.871.4682.99288forward
CNT3092760Amborella trichopodaSolanum tuberosum38.8628.4780.2197forward
CNT30291318Amborella trichopodaTriticum aestivum38.8659.1683.25197forward
CNT30559885Amborella trichopodaActinidia chinensis34.9133.7884.75177forward
CNT30542792Amborella trichopodaBrassica napus30.9736.1887.26157forward
CNT30614070Amborella trichopodaArabis alpina56.820.8482.29288forward
CNT30608822Amborella trichopodaGossypium raimondii63.5148.0681.06322forward
CNT30209019Amborella trichopodaHelianthus annuus62.5237.9682.65317forward
CNT30627268Amborella trichopodaDaucus carota62.7225.6981.45318forward
CNT30681848Amborella trichopodaTriticum urartu39.4522.683200forward
CNT30595966Amborella trichopodaOryza meridionalis34.1228.2279.77173forward
CNT30422340Amborella trichopodaPapaver somniferum35.3121.1383.24179forward
CNT30570854Amborella trichopodaVitis vinifera25.2563.6887.5128forward
CNT30706519Amborella trichopodaPrunus avium47.1428.8383.68239forward
CNT3024644Amborella trichopodaPopulus trichocarpa63.5115.7581.99322forward
CNT30322043Amborella trichopodaAsparagus officinalis60.5536.6881.11307forward
CNT30119164Amborella trichopodaCitrus clementina27.6130.0485.71140forward
CNT3099978Amborella trichopodaOryza rufipogon40.0425.0681.77203forward

Expression of CNT3054138

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MFLASHICWVSSGTVRALYCWEPREVKILYKEGGFLKKEKMICGFSRKDSLDSERERERDL*

Sequence

>CNT3054138
TCCTCCTAAACATAGCGGTGAATTGCTCGCTAACCCTCCTGAACATCTCTTGAATCGATGTTGAATTCCCAATAAAAGTTGAAGCCATCTTCAAACCAGT
TGGGGGAATATCACAAACTGTTGATTTCACATTGTTGGGTATCCACTCGACAAAGTATGATGAATTTTTGTTTTGAACGTTGATCATTTGTTCGTCAACT
TCTTTTGTGGACATTTTGCCCCTAAACATAGCAGAGGCAGTGAGATAGCGACCATGGCGAGGATCTGCAGCACACATCATGTTTTTGGCGTCCCACATTT
GCTGGGTTAGTTCTGGTACAGTTAGGGCTCTGTATTGTTGGGAGCCCCGAGAGGTGAAAATCCTCTATAAAGAGGGTGGTTTTCTCAAGAAAGAGAAAAT
GATTTGTGGGTTCTCAAGAAAAGACTCTCTTGATTCAGAGAGAGAGAGAGAGAGAGATTTATAGAGATATGGAAGAGGAAAGTCGGGTAAAAGGGGGGGG
GTTATAT