Detailed information on CNT30541358


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710308Brassica napusGlycine max53.575.2285.18695forward
CNT30311067Brassica napusCamelina sativa53.0454.5586.5689forward
CNT3075399Brassica napusBrassica juncea67.8271.1198.07881forward
CNT30261984Brassica napusBrassica rapa57.5885.5897.99748forward
CNT30229076Brassica napusAnanas comosus50.8151.1285.45660forward
CNT3066368Brassica napusSelaginella moellendorffii50.5873.3384.63657forward

Expression of CNT30541358

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MKSRLLLNVVVGQCTTILKLLAGKYQTLLVGRDSLLVLYLSLDVIDGVGALHLECDRLSR*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSSVMVLPVKVLTKICMPPRRRNTR*

>peptide 3 (47 aa)
MGLRTEREREISYLRGFIMPQTHTNHDKFSRKRDIKSHHGDATPSEG*

>peptide 4 (46 aa)
MLSEMTQLGIHRIYNVTTRFETKLSRVKIETFEWVLERKEKERSVI*

>peptide 5 (32 aa)
MRIDQTSSHFKVRQKYLQWFCPQTFCLDRNHF*

>peptide 6 (31 aa)
MISFQENETLKATTETQHQVKGRLLLDVVVG*

>peptide 7 (31 aa)
MVSELSTSSVIVFPVKVLTKICMPPRSLRTR*

Sequence

>CNT30541358
CAGCAGTTTTCACAAGCGATTCTTGATTCTCTGCTGAAGATTCTTCTAATGGCTGACCATATTCAGCAACGATAGCCATTGCTACAAACTTGCCAGTACC
AACGAGAGGAACTATCTTGTGACATTTTTCTTTCCAAGTAACTTACAGCGCATTGAGTTTAAGACATGAGGATCGACCAAACTAGTTCGCACTTTAAAGT
AAGACAGAAGTATCTTCAGTGGTTCTGTCCTCAAACATTCTGTCTGGATCGTAACCACTTTTGAATGTGATAAGCACACCTTCAAGGTGCAAAAACCCCT
GCACCGTATGCTTTCAGAAATGACACAGCTAGGCATTCACCGCATCTACAACGTAACCACAAGATTCGAAACAAAACTTTCAAGAGTAAAGATAGAAACA
TTCGAATGGGTCTTAGAACGGAAAGAGAAAGAGAGATCAGTTATTTAAGAGGCTTTATAATGCCTCAAACACACACAAACCATGATAAGTTTTCAAGAAA
ACGAGACATTAAAAGCCACCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTCAAGCTGCT
TTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAG
TGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCG
GCCAATGTACGACCATCCTCAAGCTGCTTGCCGGCAAATATCAAACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGTATCTTAGCCTTGACGTTAT
CGATGGTGTCGGAGCTCTCCACCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGATCTGCATGCCACCACGGAGCCTGAGGACGAGATGAAG
AGTCGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATACCCTCC
TTGTCTTGAATCTTGGCTTTAACATTGTCGATCGTGTCAGAGCTTTCCACCTCAAGGGTGATCGTCTTTCCGGTGAGTGTCTTAACGAAGATCTGCATCT
GTAAATTCACAAAAGCTTAAACATCAATACTCAAACTCAGAGCAATTGCAAAACACGAATCACATACAATCAACAACTCAATCACAGATCTCCAAGAAT