Detailed information on CNT30541357


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710399Brassica napusGlycine max44.6558.1888.02434forward
CNT3075198Brassica napusBrassica juncea5772.3297.83554forward
CNT30261931Brassica napusBrassica rapa54.0172.7197.71525forward

Expression of CNT30541357

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MGLRTEREREISYLRGFIMPQTHTNHDKFSRKRDIKSHHGDATPSEG*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSIVSELSTSSVMVLPVKVLTKICMPPRSLRTR*

>peptide 3 (32 aa)
MRIDQTSSHFKVRQKYLQWFCPQTFCLDRNHF*

>peptide 4 (46 aa)
MLSEMTQLGIHRIYNVTTRFETKLSRVKIETFEWVLERKEKERSVI*

>peptide 5 (31 aa)
MISFQENETLKATTETQHQVKGRLLLDVVVG*

Sequence

>CNT30541357
CAGCAGTTTTCACAAGCGATTCTTGATTCTCTGCTGAAGATTCTTCTAATGGCTGACCATATTCAGCAACGATAGCCATTGCTACAAACTTGCCAGTACC
AACGAGAGGAACTATCTTGTGACATTTTTCTTTCCAAGTAACTTACAGCGCATTGAGTTTAAGACATGAGGATCGACCAAACTAGTTCGCACTTTAAAGT
AAGACAGAAGTATCTTCAGTGGTTCTGTCCTCAAACATTCTGTCTGGATCGTAACCACTTTTGAATGTGATAAGCACACCTTCAAGGTGCAAAAACCCCT
GCACCGTATGCTTTCAGAAATGACACAGCTAGGCATTCACCGCATCTACAACGTAACCACAAGATTCGAAACAAAACTTTCAAGAGTAAAGATAGAAACA
TTCGAATGGGTCTTAGAACGGAAAGAGAAAGAGAGATCAGTTATTTAAGAGGCTTTATAATGCCTCAAACACACACAAACCATGATAAGTTTTCAAGAAA
ACGAGACATTAAAAGCCACCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTCAAGCTGCT
TTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAG
TGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATCTGCATGCCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCA
GCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGCTTTAACATTGT
CGATCGTGTCAGAGCTTTCCACCTCAAGGGTGATCGTCTTTCCGGTGAGTGTCTTAACGAAGATCTGCATCT