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Detailed information on CNT3054135


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Amborella trichopodaSetaria viridis29.4942.6286.03179forward
CNT30393881Amborella trichopodaTriticum turgidum17.4626.383.96106forward
CNT30592159Amborella trichopodaMusa acuminata17.6333.0284.11107forward
CNT30511330Amborella trichopodaSolanum lycopersicum33.9450.4986.89206forward
CNT30555589Amborella trichopodaOryza glaberrima37.0712.8984.89225forward
CNT30441013Amborella trichopodaAegilops tauschii25.0442.3482.89152forward
CNT30652852Amborella trichopodaRosa chinensis2944.2286.36176forward
CNT30624277Amborella trichopodaDaucus carota53.7168.4982.21326forward
CNT30721746Amborella trichopodaTriticum spelta55.8521.0882.01339forward
CNT30367313Amborella trichopodaSorghum bicolor29.4931.5185.47179forward
CNT30596728Amborella trichopodaOryza meridionalis19.2824.1282.91117forward
CNT30646445Amborella trichopodaCannabis sativa14.3325.2290.887forward
CNT3024196Amborella trichopodaPopulus trichocarpa36.4148.6888.69221forward
CNT30322486Amborella trichopodaAsparagus officinalis42.8355.4483.46260forward
CNT30151099Amborella trichopodaBrachypodium distachyon31.635085.42192forward
CNT30104395Amborella trichopodaOryza rufipogon19.2823.6882.05117forward
CNT30725946Amborella trichopodaLupinus angustifolius34.198.5782.61207forward

Expression of CNT3054135

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHYAPLSALEAVAAACPRRRPVLLAAIRPTF*

>peptide 2 (31 aa)
MRNSKRKKCIMLLCRPWKQWQQPVHEDAQFF*

>peptide 3 (36 aa)
MATPRTLGQQLRFTLNLWYAFPALRRGFSVLPPPAT*

>peptide 4 (32 aa)
MNQNLINSRPPKNNKIRDKMSKEKQGATKNTK*

>peptide 5 (69 aa)
MTNVLMVTTTMGMLDWVHGHTTHLRPAVALHSELVVCVPSLEERLLCPSTACYLTNHGTAPAWYYFLCT*

>peptide 6 (44 aa)
MKSLNIFNQNMHSNEPKSDKFSPSQKQQNSRQNVKRETGGNKEH*

Sequence

>CNT3054135
TGCCTCACAAAAGAGGAAACTTTTAACTAAATTACTTATAAATGCAACCTCCAAGAGGGATATAAAGTCATAACAACTTGAGCTATCAAAAGAGATGAAA
AGTCTCAACATCTTCAACCAAAACATGCATTCAAATGAACCAAAATCTGATAAATTCTCGCCCTCCCAAAAACAACAAAATTCGAGACAAAATGTCAAAA
GAGAAACAGGGGGCAACAAAGAACACTAAATGAGAAACAGCAAGAGAAAGAAATGCATTATGCTCCTTTGTCGGCCTTGGAAGCAGTGGCAGCAGCCTGT
CCACGAAGACGCCCAGTTCTTCTAGCAGCAATAAGACCAACCTTTTGACCAGGGGGAGCATCCCTCCTAACAGTACTGGCATGACCAATGTGTTGATGGT
TACCACCACCATGGGGATGCTCGACTGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTGCGCTTCACTCTGAACTTGTGGTATGCGTTCCCAGC
CTTGAGGAGAGGCTTCTCTGTCCTTCCACCGCCTGCTACTTGACCAATCATGGCACGGCACCCGCTTGGTACTACTTTCTTTGCACCTGATGGGAGCTTG
ATCCTGG