Detailed information on CNT30541276


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3073617Brassica napusBrassica juncea62.6324.51100828forward
CNT30259491Brassica napusBrassica rapa84.1957.021001113forward

Expression of CNT30541276

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MCKRLRSVHSTEHVIWTVYLRLHKRLRSQTQPRLFHIWKRKLS*

>peptide 2 (44 aa)
METQAQLRLFSSHYNKHTPLVLQLLKLDEQTQENLENILQRMNR*

>peptide 3 (57 aa)
KYIHIYHHTASGYKEIQEREEKRACISTLLCSLYFCQYHYLFLSLSYLYTCTYYTYT*

>peptide 4 (75 aa)
MLFGQFICVYISVCVLRRSQGCFIYGNASSAKVVLITLQQTHSVSITTLETRRTNTRKPREHSTENEPLIRFHRP*

>peptide 5 (85 aa)
STYIYIITPQVDIRKFKKERKKEPASLLFCALYTSVNTIIYSSLSLTYIRAHITHIHNTSHICIILTLHGCMHLTHILRCFLFHQ*

>peptide 6 (39 aa)
MTLFNMFFLIRSSKHSSFSVQNIVIHQGNELTNNVQEIT*

Sequence

>CNT30541276
CAAGTACATACATATATATCATCACACCGCAAGTGGATATAAGGAAATTCAAGAAAGAGAGGAAAAAAGAGCCTGCATCTCTACTCTTTTGTGCTCTCTA
TACTTCTGTCAATACCATTATTTATTCCTCTCTCTCTCTTACCTATATACGTGCACATATTACACATATACATAATACATCACATATATGCATAATACTA
ACACTACATGGATGCATGCATCTCACACATATACTTAGGTGTTTTCTTTTTCATCAGTAAACACTAATATCTTGCCACTACATCTCAGTTAAGGATTTGT
TTTTGTTTCGTTATAATTTTTTTCCTATTATATCTTATTATGTACATATAGACGAATGTTTAACATCCAATACTTGATAGTATATCCAGTGTGCTTATAA
AATTTCATACTTTAATTGAGTATATAAATATATCAACTCGCATTGACTTATCAACTTTTTGCAGGTTGCAGTTTAGTTTCTTTTGTCTAATGGAGTCTAA
AAGCTTACTTCTTGATCGCCGGTTTATAGCTTTAGTTTAATTATGTTATTTTCGGGGATTTGAAGAAGTTTTATTGATTGACACGGAAACTACAAATCAA
GATGACGCTGTTCAACATGTTTTTCTTAATCAGGTCTTCCAAGCATAGTTCATTTTCGGTTCAGAACATTGTAATTCATCAAGGCAATGAGTTAACCAAC
AATGTGCAAGAGATTACGTAGTGTACATTCTACAGAACATGTTATTTGGACAGTTTATTTGCGTTTACATAAGCGTTTGCGTTCTCAGACGCAGCCAAGG
TTGTTTCATATATGGAAACGCAAGCTCAGCTAAGGTTGTTCTCATCACATTACAACAAACACACTCCGTTAGTATTACAACTCTTGAAACTCGACGAACA
AACACAAGAAAACCTAGAGAACATTCTACAGAGAATGAACCGCTGATTCGATTTCACCGTCCATAGACTCAGCTATTTCTCTGAACGACTCGCTATGGAG
ATGCCTAGTGAAACTAGTAGTCGTGTCCAAGAAATAAAGAATCGACGACATCATACAGCATGTTCTGATTAATCCCCTTTGATTTGTTTGCGTCTCTGAT
AAGAGTCATTTCTTTCAAACAAGAATCGTTTTGTTTGTGTAATATTCTGTCTTTTGAGTTTACACATTACAGAGCTTTCTCATTACCAGAGAAAGCTAAT
CTACAGGAATCATCTTTCTCTTAAGCAACTTAAGCATTATAGGCAGCTAGGTGCGTAAGAACCACTTGAGAGGAGATTTGAGAAACTGTACTATCAACCA
TCTGTTTGAGAAATGTCTGGTG