CANTATAdb - search

Detailed information on CNT30541271

BLAST search results

BLAST vs Swiss-Prot:
sp|Q58G87|UBQ3_ORYSJ, E-value = 3e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30701201	Brassica napus	Quercus lobata	54.21	89.46	83.93	560	forward
CNT30233220	Brassica napus	Brassica oleracea	65.25	86.97	96.29	674	forward
CNT3073437	Brassica napus	Brassica juncea	89.16	100	95.98	921	forward
CNT30259345	Brassica napus	Brassica rapa	44.72	50.27	95.89	462	forward
CNT30477838	Brassica napus	Arabidopsis halleri	54.5	100	88.63	563	forward

Expression of CNT30541271

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GTTLLNSNLPQLKILNRLYYTSLQTAQHTKHNREK*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSNVIVLPVRVFTNICMPPRSLRTK*

>peptide 3 (50 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSKVIVFPVRVFTKICICNLKKN*

>peptide 4 (69 aa)
MKSRLLLDVVVGKSSSILQLLAGKDEPLLVRWDSLLILDLGLNVVDGIGAFNLQSDRLSCESFHKDLHL*

Sequence

>CNT30541271
CGGCACAACATTATTAAACAGCAACCTCCCTCAGCTGAAAATTCTCAATCGACTGTACTACACTAGCTTGCAAACAGCACAACATACAAAGCACAATAGG
GAAAAGTAAAAAGCAACGGCTATTATATTTCACAATAGAGAAATCCGATTTGGTTCACAAGGAAAGAGAAAACAAGGACGCAAGAGTTCATCAATTATTC
ATCAGAGGCTTTATAAAACCCCAAAACACAAACCATAAGTACTTTATAAAAGAAAACCAGATTCTAACTTTTAACCCGTAACAGGCGGAGAGTTTTAGAT
ACCACCACGGAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATG
AGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCAACCTCCAATGTGATAGTCTTGC
CGGTAAGGGTCTTCACAAATATTTGCATGCCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCC
ATCTTCCAATTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGGAG
CTTTCAACCTCCAAAGTGATAGTCTTTCCCGTCAACGTCTTAACGAATATTTGCATACCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCT
GGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT
GGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCTGTGAGAGTTTTCACAAAGATCTGCATCTGTAATTTAAAAAAA
AACTGAAATCAGTAATCAAAAACTCAAATCAAT