CANTATAdb - search

Detailed information on CNT30540863

BLAST search results

BLAST vs Swiss-Prot:
sp|P04715|RBS2_PETHY, E-value = 3e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30235444	Brassica napus	Brassica oleracea	15.13	33.46	88.89	90	forward

Expression of CNT30540863

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MSRRRGHCSGREHNGSHISFSISSLLCELGLGIMLWPSIYNGINTRNKPQSDKRVENPRD*

>peptide 2 (36 aa)
LFSFTTTQICIRSLSVLQDPYGDHLQLSIIYKISLL*

>peptide 3 (29 aa)
MEVTLVLALHVTGKAAEDLSPMNGATIVA*

Sequence

>CNT30540863
CTTATTTTCATTTACTACAACACAAATATGCATAAGATCTCTAAGTGTTTTACAAGATCCGTATGGTGATCATCTACAACTTAGTATCATTTACAAGATC
TCTTTATTATAAATATTTGTAAATGTTCATTTTTCAGTTTTTCTTACCTCCAACTCGAATTCAATACATGGAGTCCACTTGTTGCGGATAAGGTAGTCAA
CTTCCTTGGCTATTTCGACATCGGTAAGGTCAGGAAGTTAACTCTTCCGCCGTTGCTTGTGATGGAAGTAACTTTGGTGTTGGCCTTACATGTCACTGGG
AAAGCAGCAGAGGACTTAAGTCCGATGAATGGTGCGACCATTGTGGCATGAGCCGGAGAAGAGGCCATTGTAGCGGAAGAGAGCATAACGGAAGCCATAT
CTCCTTTTCTATTTCTTCTTTACTATGTGAGTTAGGTTTGGGTATAATGCTTTGGCCATCTATATATAATGGTATTAACACTAGAAACAAGCCGCAGAGT
GATAAGAGGGTTGAGAATCCAAGAGATTAGAGTAGAATAGAATTTAGACCATTGAAATTTTGAGTGGATATGGATGAAGTTTGATTGAATTGTAA