Detailed information on CNT30540820


BLAST search results

BLAST vs Swiss-Prot:
sp|F1B281|EBIII_PETHY, E-value = 6e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518802Brassica napusJuglans regia24.4531.6984.43122forward
CNT30309276Brassica napusCamelina sativa31.4653.2282.17157forward
CNT30131453Brassica napusLolium perenne18.042486.6790forward
CNT30218110Brassica napusKalanchoe fedtschenkoi19.2422.2782.2996forward
CNT30367418Brassica napusSorghum bicolor30.6622.9484.31153forward
CNT30596691Brassica napusOryza meridionalis29.861385.23149forward
CNT30106800Brassica napusOryza longistaminata21.048.6586.67105forward
CNT30577574Brassica napusOryza barthii29.8615.2885.23149forward
CNT30604447Brassica napusOryza punctata23.659.4585.59118forward

Expression of CNT30540820

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSFDVCCEPRVLFFRPCSFVCWKMIKAFGGALGFWVWLKVQSFGV*

>peptide 2 (44 aa)
GRLILSSRFKSGNFSSIRNSSFSSLNAMELDDELVLILGEVSTL*

Sequence

>CNT30540820
GGAAGACTGATTCTGAGCTCAAGATTCAAATCTGGCAACTTCTCTTCAATTAGGAACTCGTCCTTTTCCTCTTTGAACGCTATGGAGCTTGATGATGAGC
TCGTCCTCATCCTCGGTGAAGTTTCCACGCTTTAGGTCAGGTCGGAGATAGTTGATCCACCGGAGACGGCAGCTTTTGCCACACCGAAGAAGGCCGGCGG
CTTTGGGGAGAGATCTCCAGCAGCCTTCGCCATGAGCTTTGATGTATGCTGTGAGCCTCGCGTCCTCTTCTTTCGTCCATGCTCCTTTGTTTGTTGGAAG
ATGATTAAGGCATTTGGTGGGGCACTTGGATTTTGGGTTTGGTTGAAGGTTCAAAGCTTTGGTGTATAGTTTATATAAGGTTTTGACTTAAAGCTGTAGA
GCGATACATATACATAGATTGTATACAATTGCTTCTAGATGATAGAGGCGTAGAGGTAGAGAGAGAGAGAGAGAGTTGAACTTTATAATTGCTTCTAGA