Detailed information on CNT30540807


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944G9|ALFP2_ARATH, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30263633Brassica napusBrassica rapa104.3863.7192.91381forward

Expression of CNT30540807

Peptides detected in this lncRNA

>peptide 1 (85 aa)
QDICFVSFHSIMISSSTLLSSIGVAFDEHTLLSLFRLAFSGVFSKLSQRVGLGTSQESGLSSVHVLSSASPCFQTSVLESTSLRV*

>peptide 2 (50 aa)
MFSDKCSGEHELKGVGGNLFRSSSVFRLGSGSHHARLQEDTFKHDIVLSKV

Sequence

>CNT30540807
CAAGACATTTGCTTCGTCTCCTTTCACAGCATCATGATCTCTTCTTCAACATTGTTGTCTTCAATAGGTGTAGCCTTTGACGAACATACCCTCCTTAGCC
TCTTCAGACTCGCCTTCTCCGGTGTATTTTCCAAGCTGAGCCAACGAGTTGGCCTTGGCACGAGCCAAGAGAGTGGTCTGAGCAGCGTTCACGTTCTCAG
CTCTGCCTCCCCATGTTTTCAGACAAGTGTTCTGGAGAGCACGAGCTTAAGGGTGTAGGCGGCAACTTGTTCAGGAGTAGCTCTGTCTTTAGACTCGGCT
CCGGGAGTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACATGACATTGTTCTGAGCAAGGTA