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Detailed information on CNT30540712


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 3e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021341Brassica napusCitrullus lanatus58.5751.8384.15410forward

Expression of CNT30540712

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKNIDTDDPIFAEANRDHLPSASTKLKEHQF*

>peptide 2 (37 aa)
MHLDYYLNLKHKGQGHYDPNRKVHNEKKIKKTENEKH*

Sequence

>CNT30540712
CAGAGACGAGTCCATCGTAAATAATAGTCGCGACTTGAAAGCATAGACAAAAGTTAATAATGCACTTGGATTATTATTTAAACTTGAAACATAAAGGGCA
GGGCCATTACGATCCCAACCGAAAGGTTCACAACGAAAAGAAAATAAAGAAAACAGAAAATGAAAAACATTGACACAGACGATCCAATTTTTGCAGAAGC
AAACAGAGATCACCTCCCAAGTGCATCAACAAAGCTCAAAGAACACCAGTTTTGACCACACAGATCAACAAGCTTAGAAGCTTCCACCACGAAGACGCAA
CACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGA
GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAA
ATATTTGCATTCCACCACGGAGACGCAACACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTCCTTCCATCTTCAAGCTGCTTACC
GGCGAAGATAAGCCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCTACCTCGAGAGTA