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Detailed information on CNT30540694


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30236209Brassica napusBrassica oleracea62.0480.6698.37613forward
CNT3081485Brassica napusBrassica juncea51.0156.8887.3504forward

Expression of CNT30540694

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GTNNGQKDKTFPALMPPSNFDSSLRYLRL*

>peptide 2 (69 aa)
MKAMFGFSCAVEHEKWNHLRLTTFGFSFEDVYQQNLYAASPLILLAFLQSSTSLKTVQMVSVLFTIFWK*

>peptide 3 (56 aa)
MNWVQRKIYLYNVTFGLYMLDWWERYLFNGLVVVLMWFVAYNGTRYFSELFKRHLT*

Sequence

>CNT30540694
GCGGAACTAATAATGGTCAAAAAGACAAGACTTTTCCAGCTTTGATGCCTCCGTCTAATTTTGATTCTTCTCTTCGATACTTGAGACTCTGAGTGGGATC
AGATATGAACTGGGTTCAACGCAAAATCTACCTTTACAATGTCACGTTCGGGCTCTACATGCTTGATTGGTGGGAACGATACCTCTTCAATGGTTTGGTG
GTAGTCTTGATGTGGTTCGTAGCTTACAACGGTACACGCTACTTTTCTGAACTCTTCAAGAGGCATTTGACATGAAAGCAATGTTTGGTTTCTCGTGCGC
GGTAGAGCATGAAAAGTGGAACCACCTAAGGCTTACCACGTTTGGTTTCAGTTTCGAAGACGTATACCAACAAAACCTCTATGCTGCTTCACCTCTGATT
CTGTTAGCTTTCCTCCAAAGTTCGACATCACTTAAGACTGTTCAAATGGTCTCTGTCCTTTTTACCATCTTTTGGAAATAACATAACTTATTTGTAGACG
CATCAGGTCGCAAGCCTTCCTGTTGTATTCCCGATCTATTTGAGACATGGCCAAACCAATACTACAATGATTGTGCTCTTTTTGACTCTGTGACTAGCGA
ATACTACTTAGCATTCTTCATCCCTTCGATACCAAAACATGAGACATAGTTGCAGGGGATTAAAGAACTTATGGACTACAACAACTAACAGAGCACTATC
TTCAAACTGAACATCGACTCCCACCTATGATACCGAGAGACCGAATCAATATACTAACAACAGCTACGACAACTGAATAAAAAGAATGAAGATCAAAAGA
ATAAGAAGGTGGTCTACTTGGAGGGGGCTGGTGTCTCTTTGTCTTTCTTCCCGGCGAGGATCATAGATATCTGGAGACCGCGACTGAAGGCTTGGTTAAA
CAGCAGTCTGGTTTGGAACTCAGACACAAATGGGAACCAAGATAAGACTGCAATGGGTGTGAATATCGAAAGCCCCATTATGTACTCG