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Detailed information on CNT30540607


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513431Brassica napusJuglans regia47.0271.2585.16694forward
CNT30376918Brassica napusArabidopsis thaliana45.2693.4386.38668forward
CNT30510145Brassica napusSolanum lycopersicum47.0948.8185.9695forward
CNT30171036Brassica napusTrifolium pratense46.5443.8784.13687forward
CNT3074551Brassica napusBrassica juncea47.7677.991.49705forward
CNT30214147Brassica napusHelianthus annuus46.2784.9583.46683forward
CNT3066524Brassica napusSelaginella moellendorffii39.792.2884.3586forward
CNT30114617Brassica napusEutrema salsugineum46.2186.4486.36682forward

Expression of CNT30540607

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MESRLLLDVVVSKSPSIFQLLAGKDQPLLVRWDSLLILDLGLDIINSVRALHLQSDSLSGQSLDEDLHAST*

>peptide 2 (53 aa)
MPSLSCILALTLSMVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

Sequence

>CNT30540607
CATGAGATAATTGAAAATTCACTGTCACCTGATAATACTAAATCGGGACAATACTACACAAACTAGCAAAAGGCACAGCATTAATACACACAAATCACAA
TAGAGAGACGAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATT
GATCACGGGGCTTTACAAAGACCCCAAAACACAAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACG
GAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCC
GGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAA
CGAAAATCTGCATACCACCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTTCCATCTTCCAACTGCTT
GCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAAA
GTGATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATGCCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAG
CCAAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTC
GATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAAATTCACACACAAAAATTAACATCAG
TAATCAATTTCGAAAACAATCACTAATCAGATCAAACCAAAGATACTAATCTCCGATCGCGAAATAAATAACAGATCCAAGGATAACAACGCAGATGATC
ATATCATCATAGCTCTAAAATTGAAAACTCAACTATATAAATCGAATCGTCAATTATAAAATTGCAAAGAGCAATCACCGATCCACGAATTGATACAGAA
TCTAGACGAAAATCACAGATCGACGCTTAACAATGATCAAATCGTTCAAACACTAAACAGATCCTACCAAGAAACTGAGCCTAGATCGTAAAAACGAAGA
TGAACACACAAAAAGACGAATCGAAGAAGAGATCACGTTGATCGACGAATCAAATTCAAAAACAGAGAACGACTAGCGATTGAACTAATAGAGTAGATGA
GATCACGAGACTCACCTTGATTGAAACTTGCGATTGAGAGAGAATTGAGAAGAGTTTTTGATTCTATCGAATTCGA