« Back to Brassica napus search


Detailed information on CNT30540603


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 8e-157

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30312527Brassica napusCamelina sativa46.8381.5288.66688forward
CNT30262663Brassica napusBrassica rapa82.5783.2594.811213forward

Expression of CNT30540603

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSCILALTLSMVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

>peptide 2 (52 aa)
MRRCWSGGMPSLSCILAFTLSMVSELSTSNVIVLPVRVFTNICIPPRRRKTR*

Sequence

>CNT30540603
TAATTGAAAATTCACTGTCACCTGATAATACTAAATCGGGACAATACTACACAAACTAGCAAAAGGCACAGCATTAATACACACAAATCACAATAGAGAG
ACGAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATTGATCACG
GGGCTTTACAAAGACCCCAAAACACAAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACGGAGGACC
AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGA
TGCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAAT
CTGCATACCACCACGAAGCCTGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCGAGCTGTTTGCCAGCG
AAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTCACGTTATCAATGGTGTCCGAACTCTCAACCTCCAATGTGATAG
TCTTGCCGGTAAGGGTCTTCACAAATATCTGCATACCTCCACGTAGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGAATGTTGTAGTCAGCTAGAGT
CCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTG
TCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAAATTCACACACAAAAATTAACATCAGTAATCAA
TTTCGAAAACAATCACTAATCAGATCAAACCAAAGATACTAATCTCCGATCGCGAAATAAATAACAGATCCAAGGATAACAACGCAGATGATCATATCAT
CATAGCTCTAAAATTGAAAACTCAACTATATAAATCGAATCGTCAATTATAAAATTGCAAAGAGCAATCACCGATCCACGAATTGATACAGAATCTAGAC
GAAAATCACAGATCGACGCTTAACAATGATCAAATCGTTCAAACACTAAACAGATCCTACCAAGAAACTGAGCCTAGATCGTAAAAACGAAGATGAACAC
ACAAAAAGACGAATCGAAGAAGAGATCACGTTGATCGACGAATCAAATTCAAAAACAGAGAACGACTAGCGATTGAACTAATAGAGTAGATGAGATCACG
AGACTCACCTTGATTGAAACTTGCGATTGAGAGAGAATTGAGAAGAGTTTTTGATTCTATCGAATTCGA