CANTATAdb - search

Detailed information on CNT30540602

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3061502	Brassica napus	Arabidopsis lyrata	37.79	56.61	90.17	407	forward

Expression of CNT30540602

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGMPSLSCILAFTLSMVSELSTSNVIVLPVRVFTNICIPPRRRKTR*

>peptide 2 (53 aa)
MPSLSCILALTLSMVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

Sequence

>CNT30540602
CATGAGATAATTGAAAATTCACTGTCACCTGATAATACTAAATCGGGACAATACTACACAAACTAGCAAAAGGCACAGCATTAATACACACAAATCACAA
TAGAGAGACGAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATT
GATCACGGGGCTTTACAAAGACCCCAAAACACAAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACG
GAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCC
GGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAA
CGAAAATCTGCATACCACCACGAAGCCTGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCGAGCTGTTT
GCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTCACGTTATCAATGGTGTCCGAACTCTCAACCTCCAAT
GTGATAGTCTTGCCGGTAAGGGTCTTCACAAATATCTGCATACCTCCACGTAGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGAATGTTGTAGTCAG
CTAGAGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTAACGTTGTC
GATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGC
TTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAAATTCACACACAAAAAT