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Detailed information on CNT30540600


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3094992Brassica napusSolanum tuberosum53.478.2682.99911forward
CNT30312779Brassica napusCamelina sativa53.8777.1687.49919forward
CNT30612915Brassica napusArabis alpina40.2770.5385.59687forward
CNT30477817Brassica napusArabidopsis halleri53.6985.6186.9916forward
CNT30364985Brassica napusSorghum bicolor52.2386.8483.39891forward
CNT3066527Brassica napusSelaginella moellendorffii48.8399.7683.07833forward
CNT30114619Brassica napusEutrema salsugineum53.5884.5584.9914forward

Expression of CNT30540600

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSCILALTLSMVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

>peptide 2 (61 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSKVIVFPVKVLTKICMPPRRRKTKWSVDSFWIL*

>peptide 3 (52 aa)
MRRCWSGGMPSLSCILAFTLSMVSELSTSNVIVLPVRVFTNICIPPRRRKTR*

Sequence

>CNT30540600
CATGAGATAATTGAAAATTCACTGTCACCTGATAATACTAAATCGGGACAATACTACACAAACTAGCAAAAGGCACAGCATTAATACACACAAATCACAA
TAGAGAGACGAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATT
GATCACGGGGCTTTACAAAGACCCCAAAACACAAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACG
GAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCC
GGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAA
CGAAAATCTGCATACCACCACGAAGCCTGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCGAGCTGTTT
GCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTCACGTTATCAATGGTGTCCGAACTCTCAACCTCCAAT
GTGATAGTCTTGCCGGTAAGGGTCTTCACAAATATCTGCATACCTCCACGTAGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGAATGTTGTAGTCAG
CTAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTATC
AATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATGCCTCCGCGTAGACGCAAGACCAAGTGGAGC
GTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCT
TGTCCTGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTG
AAAATTCACACACAAAAATTAACATCAGTAATCAATTTCGAAAACAATCACTAATCAGATCAAACCAAAGATACTAATCTCCGATCGCGAAATAAATAAC
AGATCCAAGGATAACAACGCAGATGATCATATCATCATAGCTCTAAAATTGAAAACTCAACTATATAAATCGAATCGTCAATTATAAAATTGCAAAGAGC
AATCACCGATCCACGAATTGATACAGAATCTAGACGAAAATCACAGATCGACGCTTAACAATGATCAAATCGTTCAAACACTAAACAGATCCTACCAAGA
AACTGAGCCTAGATCGTAAAAACGAAGATGAACACACAAAAAGACGAATCGAAGAAGAGATCACGTTGATCGACGAATCAAATTCAAAAACAGAGAACGA
CTAGCGATTGAACTAATAGAGTAGATGAGATCACGAGACTCACCTTGATTGAAACTTGCGATTGAGAGAGAATTGAGAAGAGTTTTTGATTCTATCGAAT
TCGAGA