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Detailed information on CNT30540597


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30262720Brassica napusBrassica rapa73.42100.0895.431246forward
CNT30623810Brassica napusDaucus carota53.9253.0183.93915forward

Expression of CNT30540597

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSKVIVFPVKVLTKICMPPRRRKTKWSVDSFWIL*

>peptide 2 (53 aa)
MPSLSCILALTLSMVSELSTSSVIVLPVNVLTKICIPPRSLSTKWRVDSFWML*

>peptide 3 (52 aa)
MRRCWSGGMPSLSCILAFTLSMVSELSTSNVIVLPVRVFTNICIPPRRRKTR*

Sequence

>CNT30540597
TAATTGAAAATTCACTGTCACCTGATAATACTAAATCGGGACAATACTACACAAACTAGCAAAAGGCACAGCATTAATACACACAAATCACAATAGAGAG
ACGAGGATAAAGAGCAACGACTATTATATTCCACAAAAGAAGTTCGATATAACAAAGGAGAAACAAGGACGCAGAGCGCGTTCATCAATTATTGATCACG
GGGCTTTACAAAGACCCCAAAACACAAACCATAAGAAGTTTTTTAAAAGAAAAGCAGACACTGACAAGAGTTTCAGAAGCCACCACGGAGACGGAGGACC
AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGA
TGCCTTCCTTGTCTTGTATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAAT
CTGCATACCACCACGAAGCCTGAGCACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCGAGCTGTTTGCCAGCG
AAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGTATCTTGGCCTTCACGTTATCAATGGTGTCCGAACTCTCAACCTCCAATGTGATAG
TCTTGCCGGTAAGGGTCTTCACAAATATCTGCATACCTCCACGTAGACGTAAGACCAGGTGAAGCGTAGATTCTTTCTGAATGTTGTAGTCAGCTAGAGT
CCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATAGTG
TCAGAGCTCTCCACCTCCAAAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATGCCTCCGCGTAGACGCAAGACCAAGTGGAGCGTAGACT
CCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTG
AATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAAATTC
ACACACAAAAATTAACATCAGTAATCAATTTCGAAAACAATCACTAATCAGATCAAACCAAAGATACTAATCTCCGATCGCGAAATAAATAACAGATCCA
AGGATAACAACGCAGATGATCATATCATCATAGCTCTAAAATTGAAAACTCAACTATATAAATCGAATCGTCAATTATAAAATTGCAAAGAGCAATCACC
GATCCACGAATTGATACAGAATCTAGACGAAAATCACAGATCGACGCTTAACAATGATCAAATCGTTCAAACACTAAACAGATCCTACCAAGAAACTGAG
CCTAGATCGTAAAAACGAAGATGAACACACAAAAAGACGAATCGAAGAAGAGATCACGTTGATCGACGAATCAAATTCAAAAACAGAGAACGACTAGCGA
TTGAACTAATAGAGTAGATGAGATCACGAGACTCACCTTGATTGAAACTTGCGATTGAGAGAGAATTGAGAAGAGTTTTTGATTCTATCGAATTCGA