CANTATAdb - search

Detailed information on CNT30540533

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30676816	Brassica napus	Setaria viridis	4.27	33.03	91.78	73	forward
CNT30562314	Brassica napus	Actinidia chinensis	4.74	32.4	90.12	81	reverse complement
CNT30721436	Brassica napus	Triticum spelta	4.63	31.6	96.2	79	forward
CNT30415027	Brassica napus	Papaver somniferum	7.14	31.28	86.89	122	reverse complement

Expression of CNT30540533

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVNSQSTALIHLATSAPTLLYIISCLYCLK*

>peptide 2 (34 aa)
RKKPVTPWGYPALGRRTRKRKKYSETLILRRRSK*

Sequence

>CNT30540533
GTAGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCGCTTGGAAGAAGAACTAGAAAAAGGAAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAG
TAAATAGGAGAGAAAATCGAATTTCTTTCTTCGTCTTAAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAAAAAAAATCCTTTTGTAGCAAAG
CATTTATTAAGAAAAATAGAGAAGCTTAATACAAAGGCGGAAAAAGAAATCATAATAACTTGGTCCCGGGCATCACGGGCGAACGACGGGAATTGAACCC
GCGATGGTGAATTCACAATCCACTGCCTTAATCCACTTGGCTACATCCGCCCCTACTCTACTATACATCATATCTTGTTTGTATTGTCTAAAATAAACAC
GCAGCAATATTTTTTTTATCAAAAAAAAATTATAAATTATAATAGTATTTTTTTCTATTTTATTTTTATATATAATAGAAAAAATTATATAAAAAAAATG
ATTTGTTCCGTTTTATAGAAAAAAACGAGCGATATAAGCCTTCTTTTGAAGGCTTATATCGCTCGTTTTTAATATTACTAAACTAGGTCTAGAGGGAAGT
TGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA
TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGT
AAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGACCGAATC
TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATAC
ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATA
CCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATAC
CCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCA
TTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGA
AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGA
TCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTACTAGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTTTCGCGTCTCTCTAA
AATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATCATCAGGGACTCCCAAGCACACAAATTCTCTAAAACTATAAGTAGATAATTGAGAGCTTGTTAT
TGAACAGT