Detailed information on CNT30540422


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 9e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546678Brassica napusIpomoea triloba73.2537.2586.23501forward
CNT30618377Brassica napusSesamum indicum37.5768.983.66257forward
CNT30712097Brassica napusGlycine max63.7436.5584.86436forward
CNT30440472Brassica napusAegilops tauschii48.2555.4686.67330forward
CNT30203420Brassica napusHelianthus annuus28.5138.8489.23195forward
CNT30684514Brassica napusTriticum urartu60.8253.6885.58416forward
CNT30350897Brassica napusEragrostis tef73.9866.5885.77506forward
CNT30148140Brassica napusBrachypodium distachyon51.1792.1187.71350forward

Expression of CNT30540422

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSLTAKRPRGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVRISENLTAMWEVWQSRTGA*

>peptide 2 (58 aa)
MMMTWEVKLAAPFAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLT

>peptide 3 (34 aa)
RHLRSRTQLREQSSDGEVTKLQHKQATKYKTNVT*

Sequence

>CNT30540422
CGCCACCTCCGATCAAGAACCCAGTTACGTGAACAGAGCTCTGACGGAGAAGTAACGAAGCTGCAACACAAACAAGCGACCAAATACAAAACTAATGTAA
CATAAAAACTAAATTTGTCTTTCCATTCAACTGCGGGTGATAGAGTTTTCCTCAAGGTAGTTCACTTGGCACCCTTCTTGACGGCAGCCTTGGTCACCTT
GGCTCCCGTTGGATCCTTCTTGTCAACGCTCTTGATGACACCGACTGCAACAGTCTGCCTCATGTCCCTAACAGCGAAACGTCCAAGGGGTGGGTACTCG
GAGAAGGTCTCAACAACCATGGGCTTGGTTGGAGTCATCTTCACCATACCAGCGTCACCATTCTTCAAGAACTTAGGCTCCTTCTCGATCTCTTTACCAG
AACGCCTGTCAATCTTGGTGAGGATCTCAGAGAACTTGACGGCAATGTGGGAAGTGTGGCAGTCGAGAACTGGAGCGTAACCGTTACCAATCTGACCAGG
GTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCAGCACCCTTTGCTGGATCATCCTTGGAGTTGGATGCAACATACCCACGCTTGAGATCCTTGACA
GCAACGTTCTTGACATTGAATCCCACGTTGTCACCTGGAAGTGCCTCCACAAGAGACTCGTGGTGCATCTCAACAGACTTAACC