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Detailed information on CNT30540371


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLX0|RK16_NASOF, E-value = 4e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Brassica napusOryza sativa54.147.8285.93327forward
CNT30641762Brassica napusNymphaea colorata54.89.5484.89331forward
CNT30516020Brassica napusJuglans regia18.5443.9284.82112reverse complement
CNT30405603Brassica napusBeta vulgaris70.3655.6386.59425forward
CNT30198977Brassica napusPisum sativum48.8415.8584.75295forward
CNT3048584Brassica napusPrunus dulcis35.165.8487.74212forward
CNT30185636Brassica napusSecale cereale41.8916.3287.35253forward
CNT30294378Brassica napusTriticum aestivum54.816.2285.5331forward
CNT30555950Brassica napusOryza glaberrima54.1421.5885.93327forward
CNT30442098Brassica napusAegilops tauschii54.85085.5331forward
CNT30243771Brassica napusAvena sativa54.828.7185.2331forward
CNT30656274Brassica napusTriticum dicoccoides40.5649.287.35245forward
CNT30311863Brassica napusCamelina sativa49.518.3196.66299forward
CNT3060130Brassica napusArabidopsis lyrata73.5148.4295.95444forward
CNT30598237Brassica napusFraxinus excelsior20.362085.37123forward
CNT30447455Brassica napusSaccharum spontaneum54.4745.8284.5329forward
CNT30134355Brassica napusLolium perenne54.813.1584.89331forward
CNT30229832Brassica napusAnanas comosus56.6229.0885.09342forward
CNT30655378Brassica napusRosa chinensis76.9931.3187.1465forward
CNT30689030Brassica napusTriticum urartu54.87.3185.5331forward
CNT30620547Brassica napusCajanus cajan26.3250.6486.79159forward
CNT30357951Brassica napusLactuca sativa64.2441.2386.86388forward
CNT30411335Brassica napusPapaver somniferum70.5349.3686.15426forward
CNT30574575Brassica napusVitis vinifera70.8628.0589.25428forward
CNT30585636Brassica napusEchinochloa crusgalli52.155.4984.76315forward
CNT30604550Brassica napusOryza punctata42.0511.5985.04254forward
CNT30557814Brassica napusPanicum hallii26.1615.2887.34158forward
CNT30550799Brassica napusOryza brachyantha40.8918.3485.43247forward
CNT30336889Brassica napusCynara cardunculus65.5646.2185.61396forward
CNT30724130Brassica napusLupinus angustifolius30.6355.3986.49185forward

Expression of CNT30540371

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLFSFFILYSYSEIMNWVFIGIFDAAIEIAFLAIFSGTPPIS*

>peptide 2 (43 aa)
MLFTKFGSFWVIHSNYIKGVLMEMFIQPYRIAYFFFLNIKKKTT

Sequence

>CNT30540371
TTCTTTTAGTGCAAAGGACGAAGTAAAAAAAATATTGTTTGTCAAAAAAAACTTAGAATCTTTTTATCCTTAAATGTTATTTAGCTTTTTCATTCTATAT
TCCTATTCAGAAATAATGAATTGGGTTTTTATAGGCATTTTTGATGCCGCGATTGAAATAGCTTTTCTGGCTATATTTTCTGGTACACCACCCATTTCAT
AAAGGATTTTACCTGGTTTAACCACAGCTACCCAGTACTCTGGGGATCCTTTCCCAGAACCCATACGCGTTTCCGCGGGTCTTACTGTAACTGGCTTGTC
TGGAAATATACGTACCCAAATTTTTCCACCACGTCGTATATTTCGTGTCATTGCTCGTCGCCCTGCTTCTATTTGTCTAGATGTAATCCAAGCGGGTTCA
AGTGTTTGAAGAGCATATCTGCCAAAACAAATACGATTCCCACGAGAGGATATTCCTTTTAGTCTTCCTCGATGTTGTTTACGAAATTTGGTTCTTTTTG
GGTTATACATAGCAATTATATCAAAGGAGTTTTGATGGAAATGTTTATTCAACCTTATAGAATTGCTTATTTTTTTTTCTTAAACATAAAAAAGAAGACT
ACAA