Detailed information on CNT30540238


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LS01|AOC3_ARATH, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375412Brassica napusArabidopsis thaliana33.821.0286.81144forward
CNT3061212Brassica napusArabidopsis lyrata33.825.8586.11144forward
CNT30611156Brassica napusArabis alpina29.1141.6185.48124forward

Expression of CNT30540238

Peptides detected in this lncRNA

>peptide 1 (57 aa)
VETVSGFEPVTVLLRDVLDQDTETGGDSHALFEIAGVEFVGEGHEIAEAELWFLAEF*

>peptide 2 (29 aa)
MRSQGFGKIWRNLEKSFDESGDYGRDCREK

Sequence

>CNT30540238
GTAGAAACTGTAAGTGGCTTCGAACCGGTCACCGTTCTTCTCCGGGACGTGTTGGATCAAGACACAGAGACCGGCGGTGATTCCCACGCGCTTTTTGAGA
TCGCCGGTGTAGAGTTTGTTGGTGAAGGGCACGAGATCGCCGAGGCAGAGCTCTGGTTTCTTGCCGAGTTTTAGAACAGCTGGGCTGTTTCTATCTCCTT
CGTTGAGTTCGTACACGATCAGTTGACTTACTTGGTCTGGCGTTTTCTGACTTTCCCCAGTTCCAGAAGAAAGCTCGAGTAGGGGAGAGATTCTTGGAAG
TAGATCTTGATTGGGAGGAGAAATCTGGACCGTTAGATGAGATCCCAAGGTTTTGGAAAGATCTGGAGAAACCTAGAAAAGAGCTTCGATGAAAGTGGTG
ATTATGGGAGAGATTGCCGAGAGAAG