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Detailed information on CNT30539896


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLS9|PSBC_NASOF, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673559Brassica napusSetaria viridis4.8229.5888.184reverse complement
CNT30730376Brassica napusCorchorus capsularis12.4554.3991.71217forward
CNT30492211Brassica napusOlea europaea6.7124.1288.89117reverse complement
CNT30236148Brassica napusBrassica oleracea46.3652.6100808forward
CNT30607747Brassica napusGossypium raimondii5.1122.3196.6389forward
CNT30628236Brassica napusDaucus carota18.329.3592.79319forward
CNT30361727Brassica napusSorghum bicolor16.2493.0987.99283forward
CNT30369712Brassica napusOryza glumipatula3.2123.1492.8656reverse complement
CNT30120788Brassica napusCitrus clementina5.7947.6493.07101reverse complement
CNT30116897Brassica napusOryza nivara10.6738.7585.48186forward
CNT30557406Brassica napusPanicum hallii21.5188.8688.27375forward
CNT30551174Brassica napusOryza brachyantha4.0724.3287.3271reverse complement

Expression of CNT30539896

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MEPNHTCPPIISSKSSTLTIHPSPPKGDFSK*

>peptide 2 (47 aa)
MGRLDHVSHLYRPIDRLIKKVTPYIFFYIVIVLTHRAMFYLAKKKIK*

>peptide 3 (30 aa)
MFLILQAINNIHHLILLPTKKILINKGILS*

>peptide 4 (33 aa)
MQKVWLRYARFHQIYKWNLTIHALQLYLPNRPH*

>peptide 5 (34 aa)
FECVIRGMGGVISFFDLQRMNSRDKRIKDTHQED*

>peptide 6 (43 aa)
MPYFQLLFTTFILFGHEVKGSFLLHKWVDWIMYLIYIDQLIDL*

>peptide 7 (52 aa)
MSFFNLLKSKPLGPLKGSNQGARRSQKRIVSPPKITSPVGERIKYLPKPVGP*

Sequence

>CNT30539896
AATTTGAATGTGTAATTCGTGGAATGGGAGGGGTCATCTCATTTTTTGATCTGCAACGAATGAATTCAAGAGATAAGAGAATTAAGGATACCCACCAAGA
AGACTAATCCAATCCATAAAGATGTACCAGAAAATACAACATTTTTGTTACTCGACCACCCATCAGGAGACGCAAATACAACGGGTACACTAATCAGTAA
GATTGATGAAGTAATAATTAATGCAAAAACAGCCAATTGAAAAGCAATAGTCATGTTTTTAATCCTCCAAGCTATTAACAATATACACCATTTAATCCTC
TTACCCACTAAAAAAATTTTAATAAATAAAGGGATTTTATCATGAATCCGTTTATTCGAGATGCCTTATTTCCAACTTCTTTTTACCACTTTTATTCTAT
TCGGACATGAAGTTAAAGGTTCTTTTTTACTTCACAAATGGGTAGACTGGATCATGTATCTCATTTATATAGACCAATTGATAGACTTATAAAGAAAGTC
ACACCCTATATCTTTTTCTACATAGTGATCGTATTAACTCATCGAGCTATGTTCTATTTGGCGAAAAAAAAGATAAAATAGAAATTATCTTTTGGAGAGA
TGGCCGAGTGGTTGATGGCTCCGGTCTTGAAAACCGGTATAGTTCATAAAAAATAACTATCGAGGGTTCGAATCCCTCTCTCTCCTTTTGTTGGATGAAT
AGATTTTTTTCTTTATTGGCTTTTTTTACTTCTTAGCATCATAAAAAAGGAGAATGGCTCGGCTATACTATCCAGCCGAGCCAGAAAAAACGAGATTGAA
TTGAAAGAAAGAAGACTTTTTAATATGACCCGATTTTTACTTTCCTATTTTAACTACTACTTTAGTTAAGAGGAGTCATAGAAAGAACAGGTTCAAAATC
ACGATCAATTCCTTTTTCAAATCCTGCTGCCGCTGCCCGAGCTCTTCCCGCGTGCCATAAATGACCCACGAATAGGAAGAATCCTAGAACAAAATGAGAG
GTAGATAACCAACTTCTCGGAGAGACGTAATTGACTGCATTGATCTCAGTAGCTACGCCCCCTACAGAATTTAAGGAACCTAAAGGAGCATGAGTCATAT
ATTCTGCAGAACGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTTAAGTCCAAACCATTAGGACCCCTTAAAGGTTCTAACCAGGGAGCACG
CAGATCCCAAAAACGCATTGTTTCTCCTCCAAAAATAACTTCTCCAGTCGGGGAACGCATTAAGTATTTACCTAAACCTGTAGGTCCGTAAAACTCACTA
GGGTAAGCAGTATTATTAAACCAGACAAAACAACAAGCAATGAAACCACAAACAGATAAAGCAGCTAAACTATAAGACAAGTAAGCCTCCCCAGACCATA
CAAGTGCGCGGCGAGCCCATGCAAAAGGTTTGGTTAAGATATGCCAGATTCCACCAAATATACAAATGGAACCTAACCATACATGCCCTCCAATTATATC
TTCCAAATCGTCCACACTAACAATCCATCCTTCTCCCCCAAAGGGAGATTTTAGTAAATAACCAAATATAACACTTGGGCTAAGAGTCAAGTTTGTAATT
TTTCTTACATCCCCCCCTCCTGGAGCCCAGGTATCATATACGCCCCCAAAATAGAGAGCCTTGAATACTAGAAGAAAAGCACCTACACCTAACAAAATTA
AGTGAATACCCAAAATGGTGGTCATTTTATTTCTATCTTTCCA