Detailed information on CNT30539885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30237627Brassica napusBrassica oleracea58.9621.5395.24273reverse complement
CNT3082983Brassica napusBrassica juncea58.9611.3799.27273forward
CNT30574483Brassica napusVitis vinifera21.621.7987100forward
CNT30115345Brassica napusEutrema salsugineum35.2131.7792.64163forward

Expression of CNT30539885

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (39 aa)
KSSIVNSLVNSIINGSKHSISLVPPKRICNSIFYLIKFQ*

>peptide 2 (40 aa)
MRPIDINPPLFFIFMDEFRILSYLGFTYTTYITVKSDFIII

Sequence

>CNT30539885
AAATCTTCGATAGTAAATTCATTGGTTAATTCAATAATAAATGGGAGTAAGCACTCGATTTCATTGGTACCACCCAAGCGAATATGCAATTCAATTTTTT
ACTTAATTAAATTTCAATGAAGGAATAGTCGTTTTCAAGCTCAACTAACCAAAACCTAGTTTTAAAATAAAAAATATATGAATAAAAAAAATTTTTGTGG
AAAGTCTTTGATTTATTTGTCATAATAGGCAAGACTTTGTTTTATCTAGCCAATTCCGAAATGGAACTCTATTTATGATTCATTATTTCGATCTCATTAG
CCTTTTTTTTTTCATATTTTCATTTTAGCATATCCGGTTATGCGTCCCATCGATATCAACCCCCCCTTGTTTTTCATTTTCATGGATGAATTCCGCATAT
TGTCATATCTAGGATTTACATATACAACATATATTACTGTCAAGAGTGATTTTATTATTATTT