Detailed information on CNT30539881


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 4e-135

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548768Brassica napusIpomoea triloba30.5963.0785.9234forward
CNT30269346Brassica napusChenopodium quinoa25.4925.0388.21195forward
CNT30525386Brassica napusPhaseolus vulgaris29.0241.9786.49222forward
CNT30629553Brassica napusVigna unguiculata28.7627.6785.45220forward
CNT30709679Brassica napusGlycine max30.9827.7887.34237forward
CNT30145117Brassica napusMedicago truncatula30.9825.7688.19237forward
CNT3060679Brassica napusArabidopsis lyrata72.169289.13552forward

Expression of CNT30539881

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGRSCLLGIASPLLLPMVPLRRLCNPQQLP*

>peptide 2 (63 aa)
MGCLIVPLAWRRSSSLSHGRFQGLLMLQEKASRPFQRRQGRREPLLKRPLKFLLFLFFFVTNL*

>peptide 3 (99 aa)
QTQTLSLEFKKTEANYKIKLRSLSGNEVGGEGPSVVVDWISQMVSKVLQRSLTSDNGLNKESKHREHSQSSVLDLLHLQLGESLWVGSKAQWVEAASWV*

Sequence

>CNT30539881
CACAAACACAAACCCTCTCACTCGAATTCAAAAAGACTGAAGCAAATTACAAAATAAAACTTCGCTCACTTTCCGGGAACGAAGTTGGTGGCGAAGGCCC
AAGCGTTGTTGTTGACTGGATCAGCCAAATGGTCAGCAAGGTTCTCCAACGGTCCCTTACCAGTGACAATGGCTTGAACAAAGAATCCAAACATAGAGAA
CATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCGGCGAAAGCCTCTGGGTCGGTAGCAAGGCCCAATGGGTCGAAGCTGCCTCCTGGGTAT
AGCAAGTCCTCTGCTTCTCCCAATGGTCCCTCTCCGGCGACTCTGTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTGGCCCAAATGGCTAAGATGC
TCTGAGCGTGGACTAAGCCCGGCTCACGGTTCCTTGCGAATGTCTCGGGATCGGCTGAGAGGCCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCC
GGTAAGGTAGCTCGGTGGCTCGCCAGAGAATGGACCCAAGTACTTGACTCTTTCGAAACCGTACCATGGGCTGCCTGATTGTCCCTTTGGCTTGGCGACG
GTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCTGCAGGAGAAAGCTTCACGGCCTTTCCAGCGAAGGCAGGGGAGGAGAGAGCCATTG
TTGAAGAGGCCATTGAAGTTTCTTCTTTTTCTTTTTTTTTTTGTGACTAACTTGTGAGTGAGAGT