CANTATAdb - search

Detailed information on CNT30539604

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 7e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30618428	Brassica napus	Sesamum indicum	16.73	29.01	89.51	143	forward
CNT30503993	Brassica napus	Nicotiana attenuata	18.48	57.45	94.3	158	forward
CNT30564255	Brassica napus	Actinidia chinensis	40.58	48.67	84.44	347	forward
CNT30588719	Brassica napus	Musa acuminata	24.09	48.36	85.44	206	forward
CNT30684845	Brassica napus	Triticum urartu	28.3	14.77	89.26	242	forward
CNT30721807	Brassica napus	Triticum spelta	28.77	27.36	86.59	246	forward
CNT30426787	Brassica napus	Papaver somniferum	28.77	22.32	89.02	246	forward

Expression of CNT30539604

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MTELYFAPFLTAALVTLAPVGSFLSTLLMTPTATVCLMSLTAKRPSGGYSEKVSTTMGLVGVIFTIPASPFFKNLGSFSISLPERLSILVWQSRTGA*

>peptide 2 (73 aa)
MMMTWEVKLAAPLAGSSLELDATYPRLRSLTATFLTLNPTLSPGSASTRDSWCISTDLTSVVNPEGAKVTTIPG

Sequence

>CNT30539604
ATCAAGATTAAATCGATAGATGTGATTTAAGACTAACGACAAGGAAATAAAACACGAAACATAAGTAAATAACCGCAGGAATGTCATCATTTTCATAACA
AAATATTCAAAACAGTTCATAATCCAAAAGCAAAAAGAAAACAGAAAGCTTGAGAGAAGCTCCGCCACCTCCGATCAAGAACCCAATTACGAGAAGAAAG
TTCTGACGGAGACGAGACGAGTCTGTTACACAAACAAGCAACAGAAAACCAAACTAACAATGCAAGAAAACTAAAATAGGACTTTGATTCATCTGCGGAT
GATAGAGAGTTGATGACCGAACTTTACTTCGCACCCTTCTTGACGGCAGCCTTGGTCACCTTGGCTCCGGTTGGGTCCTTCTTGTCAACGCTCTTGATGA
CACCGACTGCAACAGTCTGCCTCATGTCCCTCACAGCGAAACGTCCAAGTGGTGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTCGGAGTCAT
CTTCACCATACCAGCATCACCATTCTTCAAAAACTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCAATCTTGGTGTGGCAATCAAGAACCGGG
GCGTAACCGTTACCGATCTGGCCCGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTAGCAGCACCCTTGGCAGGGTCATCCTTGGAGTTGGATGCAA
CGTACCCACGCTTGAGATCCTTGACAGCAACATTCTTAACGTTGAATCCCACGTTGTCACCTGGAAGCGCCTCCACAAGAGACTCGTGGTGCATCTCAAC
AGACTTGACCTCAGTGGTCAACCCTGAAGGAGCGAAGGTCACAACCATACCAGGC