Detailed information on CNT30539514


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3080286Brassica napusBrassica juncea14.04100.388.75329forward
CNT30260952Brassica napusBrassica rapa14.359.0890.45335reverse complement
CNT30612419Brassica napusArabis alpina5.864.1584.56136forward
CNT30480070Brassica napusArabidopsis halleri4.124.0685.4296forward

Expression of CNT30539514

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MALFVSWLPASATRVSDQRLRHDVADSCSFEGRTIDRSGCRYVVRFYVVRLIAAVVVMLFVSVSLATKYLLLAYICSCVLRFRQKRG*

>peptide 2 (48 aa)
MVDAFNDIFREEWRIMINECVYLNYTLLQCNSVTFPDFFAGKMNKSRS*

>peptide 3 (47 aa)
FLFIEKTNRSELTVEMLKLMADCIHCLIVFLDTGRGRRVSRKLPKSF*

>peptide 4 (41 aa)
FFIYRENKQVGAYCGDAKIDGGLYPLPYCFLRYWSRKTRFT*

>peptide 5 (38 aa)
MLQEVSGDDVSPKGRLSLPKVLVQTHIKLKASSYTQPS*

>peptide 6 (34 aa)
MFFCFLNFIIKIYFSDSNTVYIKIIFFLIKKLSF*

>peptide 7 (31 aa)
MGHPRLLSWPVGPIPSNGRSVNFLRLEIIVY*

>peptide 8 (29 aa)
MMSLIVVRLKVARLIAAVVAMLFVSMSCD*

Sequence

>CNT30539514
TTTTTTATTTATAGAGAAAACAAACAGGTCGGAGCTTACTGTGGAGATGCTAAAATTGATGGCGGATTGTATCCATTGCCTTATTGTTTTCTTAGATACT
GGTCGCGGAAGACGCGTTTCACGTAAGCTCCCAAAGTCTTTCTGATAGTCAACTCTTCATCTTACTCTTCTTCGATTCCAGTCTGAAACATAGATGTGAG
GAAATGTGTTCCCAGCTCCTTGACCCGTGATTAGCAGCTCTGAGGAAGTAACTCAGCCAGTTGAAGATGTGGTACATGAATCATTTGATGGGATAGAACA
TACCTTTTTATAGTTGATGAATCTCCAAGATTCACAGAAAGGAAGTAATGGTAGATGCATTCAATGATATATTTCGTGAAGAGTGGAGAATAATGATTAA
TGAGTGCGTTTACTTAAACTACACTTTGCTTCAGTGTAACTCTGTAACGTTTCCAGATTTTTTTGCAGGTAAGATGAACAAAAGCAGAAGTTAGGGCTCG
AGAAGTGTAACGCCCCCGACTGTCCACGGCTAATGGGCCATCCACGCCTACTCTCTTGGCCCGTGGGTCCCATCCCATCGAACGGTCGGTCCGTTAATTT
TTTAAGGCTCGAAATCATTGTTTACTGACCCTGCAATCACCATCCGACCTTTCCCCGTGCTTTGGCCTCACTCACACAGTATCGCGAATCACTTCCCGAT
AGGTCACCCATCCTTTCACTACTCCAGCTCAAGCACGCTTAACTCTGGAGTTCTAAACGGATGTGTAACGGAAAAGGTAAGTTAACTTTGGTGACATAGG
TAGACAAATCAATTCTACTAAGCATTTTCCATATATCACAAGTCGGGATGTTACAAGAAGTTTCTGGAGACGACGTATCTCCAAAAGGAAGACTTTCTCT
ACCGAAGGTCTTAGTTCAGACCCATATAAAATTAAAAGCAAGTTCATATACTCAGCCCAGTTAGAAACTATCAGAATAAAAGCTCGCAGATTAATTACCT
GGTGACATGTGTCACTTTCTGGTGCATCTACTTAACGACGTGGCTTCTTCTCGTGAGAGAAAATCTTACTTTATATAATAGATAATATATTATCTTTTAA
TTTAAAATATATCTTTGTTACTTATGTTTTTCTGTTTTTTAAATTTTATAATTAAAATATATTTTTCAGATAGCAACACAGTATATATAAAAATTATCTT
TTTTTTAATAAAAAAATTATCTTTTTAGTTTGAAATATATCTTGTAGATTTTGGATAATTTTTATTATTATTAATTCTATTCAATTATCTAATCAAAATA
ATTTAAATTTGATTATGTTTGTAACTAATTTATATACTTAATTCATTAAGGGTATAAATAATATTAACCAGTCTAACTTTTAACGTGAGAATTCGAATGC
AAAAAATCATTTCTCAAATAATCGTATGATTATTTCTATACAACCATAATTTTATTATATAGGTAGAGTAATGATATTGCATGTTATTAATTTTATATAA
AACAAAAAAACAAAAATACTAAATTATTATTTTACACTAAGGAAATAACATTTATATGTAAAAGTAATTTTAAATTAATATTTACTCACTAAAATAAAAT
AATATAGGATCTCAAATTCAATCGAACTTATTATAGACTAAGGAAGATATTAAAAAATCCGCAATTATCCATTTAAAAGAAATTCAAAGAAGATATGCAA
ACAAGCAAGATCCCAGAGAACCTGCAAAGCTGCAAAAAAGAACAAGCCACATACAATTTAAAAAAAAAGAGAGGCTAACAAGAACTGGCTTCTTCTCTAG
CAATCAACGGTTCAACTTGATCATCAGCTACGGATTCCTCTGAAAAGGGAGATCGAGGTAGGAAATAGACCAGTCCAGGACAGCGGCCAACTCGACGACA
GCCTTGCAATATTCCTCCATTCCCTTCAAACGAAACAGCTCCTCTTCCGCGTCCATTCCTCCATCTTTAATCTCACCCAGCAGATCGATGTTTGCAACCA
CTTCGTGAAGCTGGATTTCCACGTCAACTTCCTTCTTCTTGTTCACCCATGGCCCTGTTCGTTTCGTGGTTGCCAGCGTCAGCGACCAGAGTCAGCGACC
AGCGACTGCGACATGATGTCGCTGATAGTTGTTCGTTTGAAGGTCGCACGATTGATCGCAGCGGTTGTCGCTATGTTGTTCGTTTCTATGTCGTGCGATT
GATCGCAGCGGTTGTCGTTATGCTGTTCGTTTCTGTATCGCTGGCGACCAAATATTTACTTTTGGCATACATTTGCTCTTGTGTACTTAGGTTTCGTCAA
AAACGTGGCTAAATCATTAAAACTGTAAAGTGTAATAAATCAC