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Detailed information on CNT30539441


BLAST search results

BLAST vs Swiss-Prot:
sp|P48937|ACCD_BRANA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678279Brassica napusSetaria viridis11.8167.2585.62577forward
CNT30615987Brassica napusSesamum indicum6.426.5984.35313forward
CNT3019929Brassica napusCitrullus lanatus4.174796.08204forward
CNT30629265Brassica napusVigna unguiculata8.5937.192.14420forward
CNT30589396Brassica napusMusa acuminata2.1927.6585.05107forward
CNT3089355Brassica napusVigna radiata9.3376.5187.06456forward
CNT30237333Brassica napusBrassica oleracea12.0738.2999.83590forward
CNT30172172Brassica napusTrifolium pratense8.9456.1784.44437forward
CNT30146680Brassica napusMedicago truncatula10.842.1488.45528forward
CNT30444216Brassica napusAegilops tauschii7.269.784.94352forward
CNT30258531Brassica napusAvena sativa11.8797.3288.45580forward
CNT3077544Brassica napusBrassica juncea9.7229.7699.16475forward
CNT30265852Brassica napusBrassica rapa2.1123.5791.26103forward
CNT30477828Brassica napusArabidopsis halleri10.4210096.86509forward
CNT30622174Brassica napusCajanus cajan7.7351.9289.42378forward
CNT30480921Brassica napusChara braunii3.8124.4783.33186forward
CNT30434475Brassica napusPapaver somniferum5.468.7593.56264forward
CNT30323704Brassica napusAsparagus officinalis698.6588.4293forward
CNT30121217Brassica napusCitrus clementina16.1788.0790.89790forward
CNT30149719Brassica napusBrachypodium distachyon1.4731.5890.2872forward
CNT30578317Brassica napusOryza barthii8.7888.6485.08429forward

Expression of CNT30539441

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHYDRNSQFSGKYSSFHHFFACTRSSIQIMSFDFTCFSL*

>peptide 2 (36 aa)
MQNDARLSIDLYLYLNYLSICKQERKKTLFYFSSRI*

>peptide 3 (89 aa)
MVGKLNVISFHTSQAAASSGLHLQASRIISLPSTARSRPSLRACTHASRATRLATAPGAFPQGWPKVPPPNCSTESSPKISVKAGICQT*

>peptide 4 (82 aa)
MKIRIFLYCVKFSLKKRNICSSLMNISDMKNFFSKISYTNIKKKFLFQYGMKRKGQHAEWVEEVGILGSSPDTKLKKRIKKS*

>peptide 5 (64 aa)
MFVGIYVLYNILPNGSYQIEVFKIKRGVIRFGLIRSKKSYFFEYEEIKKPLQVPERLGLLKAQK*

>peptide 6 (31 aa)
MGSAETMSSSIGFQVPGSIESSILSELVIFK*

>peptide 7 (29 aa)
MQKKNLNSSFSIQSKQSMSMQLLIAKIIK*

>peptide 8 (32 aa)
MIPYNYIHTNKYIDLNFIQRSDDDPFFQKSAN*

>peptide 9 (31 aa)
MNFSGFSFNYDKLTVLFDFIFVQRKKSMELK*

Sequence

>CNT30539441
TATATATTAGATCCAGTTATACAATTTTTTGGAATTGAGAAAATATGACTTTCCTTTTTTTGTTTTCAAAGTAACTCTCATCAACTATAACTATTTTGTT
GTGAACCTTTACTTTAGGAATAATTTATATAATTGTTTATATCTAAAATAATAAAATCTCCTTCCTTTATATGATCCCCTATAACTATATACATACAAAT
AAATACATTGACTTGAATTTCATCCAGCGGTCCGACGATGATCCATTTTTTCAAAAGAGCGCAAATTGAGTTACCCCATATAATACGTTTACACATGCAT
AAAAACTTTTTTTAGTTATGTTTGTAGGAATCTATGTGTTATACAATATTCTACCAAATGGGTCTTATCAAATCGAAGTTTTTAAAATAAAAAGGGGAGT
TATACGATTCGGTCTCATCCGATCTAAAAAATCTTATTTTTTTGAATATGAAGAAATAAAGAAGCCATTGCAAGTGCCGGAAAGACTAGGCCTACTAAAG
GCACAAAAATAGAGGGTAAGTTGTTGAAAGTTGTCATAAAATGGGGTACCTCAATTTAATATTTGTACCTGTTATTGTTATATTCTGAATTCTAAAGATA
TCTTAGAATATCTTGTAGTTTTATTATTTCTATTATATATATTATATAATTATACTAAGTATCTTTAAGTAAATATATATCGAATACTAATATACAACCT
AATAGAAATAATAGAACCTACTAGAAATAGAATAAAAAAATAGGTACAAGAAATGCCAAACTAAATAAATGGACTTATTAATCTTTCAAAATAAAATAGA
TGTATTATCATAATCTCCCTGTTAGATTTATTATTCTTTTTGTTCTTTTTGTCTTCTAATAGTCATTAATAAAGAAAAAATTTTATTCCATTAAAATTTT
ATACAAAATTGATTGGAATCTGATCCACCAACAGGGAATTTTCGGGAAATGCAAAACGATGCAAGACTCTCTATAGATCTATATCTCTATTTGAATTATC
TATCCATATGCAAGCAAGAGAGGAAAAAAACTTTGTTTTATTTTTCTAGTCGAATTTGAACTTCCCGAAAGCAAAAATTCACTTTTTATCTTGTTGATAA
AGGTTTACTGAGTAGTAAACAAGAATATCGATAAAAAAATGATTCTAAAGAAAAATGAATTTTTCAGGGTTTTCGTTTAATTATGATAAACTAACTGTTT
TATTTGATTTCATTTTTGTTCAAAGGAAAAAAAGCATGGAGCTGAAATAACTCACTCACAACACCTTTTAAAGGATTACGTGGTACAATTGCATCCAATA
AGCCCTTACGTAATAAAGATTCAGCTGCTTGTGAACCTTCAGGCACGGCTTTTTTCAATGTTTGTTCAATTACTCTTTTACCCGCAAATGCAATATAGGC
ATAGGGTTCGGCAATAATGATATCCCCCAACATACCAAAACTTGCTGTCACCCCACCGGTAGTAGGAGATGTAAGAATTGATATATAGAATAACTTTTTA
CTTGATTGATAATCACATAAAACCGAAGAAATTTTAGCCATTTGCATCAAACTTAAACTTCCTTCTTGCATTCGTGCTCCTCCGGAAGAACACACTAAAA
TAAGAGGTAAACATTGATTGGTAGCATACTCGATCAAACGAGTTATTTTTTCGCCTACTACGGATCCCATACTACCCCCCATAAACTGAAAATCCATAAC
CCCAAGAGCTACCGGAATACCGTTTAATTGACCTGTACCTGTTTGAATAGCGTCAGTCAACCCTGTCTTTTTTTGAGCAGAGGCAATACGCTTTTTATAA
GGTTCCTCCCTCGAATGAAATTTAATGGGATCCGCAGAGACCATGTCTTCATCCATAGGATTCCAAGTACCCGGATCAATCGAAAGCTCAATTCTCTCTG
AACTGGTCATTTTCAAATAATGTCCACATTCTTCACAAACATTCATTTCGACTTTCTTATACATTAATCCATAACAATTGTCGCATTGAATCCACAATTG
ATTGTAGTTTTTAGTTATATCGAAATCCTTAGAACTCATTAAATTATTACGATTACTATTAGTTCTTATCTTGTCATTTTTGCTTTCACGAATCTTTCCA
CTTCCACTTTCACTACAAATGAAATTATAAATGTAACTTTCATTGGAATTATTACTATCGCTTAAAAAGTGACTATTAATACAGATGTGAGAACGAAAAT
AAGAGTCAATGCAACTATTAATGTGATTATTACAATTATATTTAGTATCCTTAATGTAAGGATCATAGTGCAGATCGTTGTCACCTTTAGATCTATTATT
CAGATAACTAGAACTACAATAACTATAAAAAAAAATTTCTAGGTCACTCAAATCATTGTTAATCTCAAATTTTTTCTTTTTTATATCAAAATATATAGAA
TAACTATTTTTATTACTATCCCTAACAAAAAAGGTGTCATCCGATATGAAATTCCGAATGTCCTTGGAGTTAACTAAAAGATCAACATTATTGTAATAAC
TAGAACGCTCACCCCAACCATAAAAGTTTTTATCCATATCATATATAAACCGGTCTTTACTTATAGTAGTCTTTTCAATAGGAGCAAAACTATCCATTGC
TTTACTTAGCTCGCCTCTGTATTCCAATTCTCCCTTAGAAAACATCAAATTGAACCACGATTTTTCCATAGAGCTTCTGGCCTCTATTTACATGAAAATA
AAATAACAATAGATGAATAGTCATTCAATGAAAAAATTGAAAAATGCAAAAAAAAAATTTGAATAGTTCATTTTCTATTCAGAGTAAGCAAAGCATGTCA
ATGCAATTGCTAATTGCTAAGATTATTAAGTAAAAGCAATTGAAATTAATAAATTTCAATTCTAAATGAAAATAAGGATTTTCTTATATTGTGTAAAATT
CTCATTAAAAAAAAGAAATATTTGTTCTTCGCTTATGAATATAAGCGATATGAAGAACTTTTTTAGTAAAATCTCGTATACTAATATAAAAAAAAAGTTT
TTATTCCAATACGGAATGAAAAGAAAAGGACAACATGCAGAATGGGTAGAAGAAGTGGGGATACTTGGTTCAAGCCCTGACACGAAACTTAAAAAAAGAA
TAAAAAAATCCTAAGAATCCATATTTCGTATAGAATTTCTTGTGGACACTACAATACAAAAGTGTAGTTGTGTTTAATCTTCTTTTTTTTTCAGATTTTG
TATATCTAGATTAAGTATGTATCTATCAAAAACAGTATATACACTAGATAAACTCGGCTCAATCTTTTTTTTACTAAAAGGATTGAGCCGAGTTTAATTG
CAATTAAACTAATAAAACGGACGTGAATTACTAATCTAATTTCTAGTCTTGGCCATCTAATTTATCGATGGTTGGGAAGTTAAATGTGATCTCCTTCCAT
ACTTCACAAGCAGCAGCTAGTTCAGGACTCCATTTGCAAGCCTCACGGATAATTTCATTACCCTCGACTGCAAGATCACGTCCCTCATTACGAGCTTGTA
CACATGCTTCTAGAGCTACTCGGTTAGCTACGGCACCCGGTGCATTTCCCCAAGGGTGGCCTAAAGTTCCGCCACCAAATTGTAGTACGGAATCATCTCC
AAAGATCTCGGTCAAAGCAGGCATATGCCAAACGTGAATACCCCCTGAAGCCACAGGTAGAACACCTGGTAGTGAGACCCAATCTTGAGTGAAAAAGATA
CCACGACTTCGGTCTTTTTCAACATAATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCCCTGTCTCCTTCAAGTTTACCTACTACTGTACCCG
CGTGAACATGATCTCCACCCGATAGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACCATGATTCTTCTGTCTATCAATAACAGCGTGCATTGCACG
GTGGATGTGAAGAAGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATATAGCTCTTTTCATCATTTCTTCGCATGTACCCGCAGTAGCAT
TCAAATAATGTCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGAGA
GTTCACATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCATAGTTCTTCGCGGATAACCCCAACTTAGGTTTA
ATAGTACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAACTTGGATACCATGAGGTGGTCCCTGGAAAGTTTTAGTATAAGCCGGAG
GGATTCGCAGATCCTCTAGACGTAGAGCAGCCAGGGCTTTGAACCCAAATACGTTACCCACAATTGAGGTAAACATGTTAGTAACAGACCCTTCTTCAAA
AAGGTCTAATGGGTAAGCTACATACGCAATAAATTGAGTTTCTTCTCCTGGAACGGGCTCGATGTGGTAGCATCGTCCTTTGTAACGGTCAAGGCTGGTA
AGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGCCCCTGCTTCTTCAGGTGGAACTCCGGGTTGAGGAGTTACTC
GGAATGCTGCCAAGATATCAGTATCCTTGGTTTCATATTCAGGAGTATAATAATTCAATTTATACTCTTTAACACCAGCTTTGAATCCAACACTTGCTTT
AGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACAAAACAACAAGGTCTACTCGACATAAATTAGGA
ATAGATTTAATTAACCTTTTTCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTATTAGACCATGATATTTGAT