CANTATAdb - search

Detailed information on CNT30539409

BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 1e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315049	Brassica napus	Corylus avellana	28.43	26.35	79.55	176	forward
CNT3078186	Brassica napus	Brassica juncea	75.12	85.79	90.54	465	forward
CNT30262092	Brassica napus	Brassica rapa	62.36	100	100	386	forward
CNT30650976	Brassica napus	Rosa chinensis	29.56	18.14	79.23	183	forward

Expression of CNT30539409

Peptides detected in this lncRNA

>peptide 1 (52 aa)
GSETGHRSRTQCTRPGNSAELTRSERVSRASSPEADRLMVEMTSAPEWQEEE*

>peptide 2 (37 aa)
MAASSAVLNVPSQTLVPFRGSRISDAHFPQGRLRIPL*

Sequence

>CNT30539409
ATGGTTCTGAAACTGGCCACCGTTCCCGAACCCAATGCACTCGTCCGGGAAACTCAGCTGAGTTAACTCGCTCTGAGAGAGTAAGCAGAGCTTCTTCGCC
GGAGGCTGATCGTCTGATGGTGGAGATGACGTCAGCGCCGGAGTGGCAGGAGGAGGAATAAGATCTGGGAAGTTGAGCTTGGCTTTGTCGCCGCGGATAC
GCTTAGCCGCAACGTCATAAGCCATGGCGGCTTCCTCCGCCGTGTTGAACGTCCCGAGCCAGACTCTGGTGCCTTTTCGCGGATCTCGTATCTCTGACGC
CCATTTTCCCCAGGGACGCTTGCGTATCCCTCTGTAAACGTTCTTCCTCCTCCGTTTCTCCGTCGCAGGCTCCCTCTTATTCACCACCGCCTCATCTTTC
AACGCCACTTCTAAAGTTTAAAGCTTGGAGGTGGGATGGAAACCCCATAAATAGTCGCCGGCGGAAGCATCGAGCTCAGACCAGAGTTCCTCCGCCGTGA
GTTTCCTACCCTTGGCCTTGGTGAGGATAGGAACAAAATCGGAAATGATAGCACCGCCACACATTTTATCTGTTTCTTTTCTTTCTCTGATGCTGGGTTT
CAAGAGAGAGACGAGTTAG