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Detailed information on CNT30539322


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 5e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234848Brassica napusBrassica oleracea99.3697.299.36625forward
CNT30263808Brassica napusBrassica rapa51.9970.63100327forward

Expression of CNT30539322

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLLGKA*

>peptide 2 (35 aa)
TKNINPFPFSSTTQLIRQRVIGLMLNHTNTCKFYI*

>peptide 3 (57 aa)
MVSKILQRSLTSDNSLNKESKHREHSQSSVLDLLHLQLREGLWVSSSVARRRMGPST*

Sequence

>CNT30539322
TAACAAAAAACATAAATCCATTTCCATTTAGTTCTACGACACAGTTGATAAGACAAAGAGTTATTGGATTAATGTTAAATCATACAAATACTTGCAAATT
TTACATCTAAACAACATCTCTTTCTCCTCTTACACTCACAAGAAGCAAATACTGAAGCAAATTACAGATAAAAACATCGCTCACTTTCCGGGAACGAAGT
TGGTAGCAAAGGCCCATGCATTGTTGTTAACTGGATCAGCCAAATGGTCAGCAAGATTCTCCAAAGGTCCCTTACCAGTGACAATAGCTTGAACAAAGAA
TCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAGGCCTCTGGGTCAGTAGCTCGGTGGCTCGCCGGAGAA
TGGGCCCAAGTACTTGACTCTTTCGGACCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACGGTCTTCCTCATTGTCACACGGCCGCTTCCA
AGGACTTCTGATGCTGCTGGGGAAAGCTTGACGGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGCGGTTGAGTGCTGAG
CAAAATAAAACGTTTATTGGTTGTTGTTT