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Detailed information on CNT30539234


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 2e-161

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Brassica napusSetaria italica24.8130.2782.38227forward
CNT30530404Brassica napusEucalyptus grandis35.4191.2784.26324forward
CNT30316147Brassica napusCorylus avellana41.250.683.82377forward
CNT30703138Brassica napusQuercus lobata43.0675.1982.49394forward
CNT30375121Brassica napusArabidopsis thaliana61.5377.0280.46563forward
CNT30499549Brassica napusCoffea canephora44.1582.4581.68404forward
CNT30615836Brassica napusSesamum indicum18.0343.0880165forward
CNT30268105Brassica napusChenopodium quinoa43.9347.9180.1402forward
CNT3021247Brassica napusCitrullus lanatus43.1742.8982.03395forward
CNT30729539Brassica napusCorchorus capsularis45.7962.3579.47419forward
CNT3068683Brassica napusQuercus suber43.9381.7183.33402forward
CNT30524728Brassica napusPhaseolus vulgaris43.9374.4480.6402forward
CNT30486152Brassica napusOlea europaea26.4526.7481.82242forward
CNT30506399Brassica napusNicotiana attenuata34.6495.7780.76317forward
CNT3091042Brassica napusSolanum tuberosum24.9262.4780.26228forward
CNT30177095Brassica napusSecale cereale2013.282.51183forward
CNT30289293Brassica napusTriticum aestivum14.3243.0984.73131forward
CNT30223417Brassica napusHordeum vulgare24.4898.6882.14224forward
CNT30590847Brassica napusMusa acuminata11.0422.186.14101forward
CNT3084565Brassica napusVigna radiata37.720.4180.58345forward
CNT30511842Brassica napusSolanum lycopersicum20.3340.6180.65186forward
CNT30143836Brassica napusMedicago truncatula42.6266.982.56390forward
CNT30244810Brassica napusAvena sativa36.2841.0978.01332forward
CNT30261302Brassica napusBrassica rapa55.7498.6599.22510forward
CNT30457070Brassica napusSaccharum spontaneum44.3759.6281.53406forward
CNT30131528Brassica napusLolium perenne32.965.2981.73301forward
CNT30231964Brassica napusAnanas comosus20.9815.7481.77192forward
CNT3066796Brassica napusLeersia perrieri21.5350.6481.22197forward
CNT30653881Brassica napusRosa chinensis43.537.2779.4398forward
CNT30718631Brassica napusMalus domestica golden24.1538.582.81221forward
CNT30339698Brassica napusEragrostis tef31.1523.0883.51285forward
CNT30477892Brassica napusArabidopsis halleri41.235.2383.55377forward
CNT30363710Brassica napusSorghum bicolor24.4838.1681.25224forward
CNT30595456Brassica napusOryza meridionalis21.5334.5681.73197forward
CNT30359656Brassica napusLactuca sativa39.8921.681.92365forward
CNT30425316Brassica napusPapaver somniferum23.9345.4483.11219forward
CNT30570592Brassica napusVitis vinifera24.5969.6682.67225forward
CNT30645151Brassica napusCannabis sativa24.2623.2981.98222forward
CNT3055709Brassica napusAmborella trichopoda35.6349.8581.29326forward
CNT30105598Brassica napusOryza longistaminata44.4859.0779.61407forward
CNT30319856Brassica napusAsparagus officinalis26.018581.51238forward
CNT30574680Brassica napusOryza barthii28.228.1781.78258forward
CNT30580197Brassica napusEchinochloa crusgalli44.1549.0381.19404forward
CNT30499107Brassica napusDigitaria exilis23.9356.0181.28219forward
CNT30115589Brassica napusOryza nivara28.218.0881.78258forward
CNT30594668Brassica napusEragrostis curvula27.3274.1880.8250forward
CNT30603529Brassica napusOryza punctata40.3348.2481.3369forward
CNT30174824Brassica napusVigna angularis32.6831.4779.6299forward
CNT30550386Brassica napusOryza brachyantha29.497.8281.41269forward
CNT30337932Brassica napusCynara cardunculus37.742.0781.74345forward
CNT30726386Brassica napusLupinus angustifolius24.2624.6982.88222forward
CNT3064271Brassica napusSelaginella moellendorffii31.0451.6478.17284forward
CNT3050773Brassica napusCucumis sativus14.6423.8484.33134forward

Expression of CNT30539234

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDRVERGKIVNANVAIAIPTRTKMSLCSRSM*

>peptide 2 (57 aa)
MMHHVLFTPREEVIHHDHRVSPLHQPIHQMRPHEPRAARHDHSQPLAFQSQRDFPPR*

Sequence

>CNT30539234
GCGAATTTGAAGGATTACCAATAGGATTAACGTTGCCCCAGTAAGTCTCGACCTGAGGATGCTGAAGAGGATCACCGTAAACCTCGCTAGTACTCGTCAG
TAGAAACCTAGCACCCACTCTCTTGGCCAAACCAAGCATGTTCAACGTCCCAACCACATTCGATATGATAGTCTTGACGGGATTGAACTTGTAGTGAACA
GGGGAGGCAGGGCAGGCCAAGTGATAGATCTGATCCACCTCAAGAAGAATGGGCTCGACGACGTCGTGGCGTATGAGCTCGAAGTTAGGGTTCCCGAAAT
GATGCATCACGTTCTCTTTACTCCCCGTGAAGAAGTTATCCACCACGATCACCGTGTCTCCCCTCTCCATCAGCCGATCCACCAGATGCGACCCCACGAA
CCCCGCGCCGCCCGTCACGACCACTCTCAGCCCCTTGCGTTTCAATCCCAGCGGGATTTTCCCCCCCGTTGACCCGATCCGGCTCCTGTACTCGACGCTG
GGCCTCCTCTGGGCCGGAACGTGCGACTCCTCGGGTTTGATTCCGTAGCCGGCGAACGGATCGGAATAAGAGATGGATCGGGTGGAGCGGGGGAAGATCG
TGAACGCTAACGTCGCGATTGCGATTCCGACGAGGACGAAGATGAGTCTCTGTTCGCGGAGCATGTAACGCATCGGACGGGACGCGGAGAGCCACCGTTT
GGGAGGTCTCGGGTAGTACGCATCGGCGCCGGCTTGATCCGCCTCGTGTCGCCGGTTGATCAGCTCGCTCGCCATCTCGCTTCCTTCTTCGGTTTTTTTT
TGGGGGGAAAGAAAAAATCTCCGAGTCGAACTCGCCGGGAACTGAGTCGAGTTTGAACGAGACGAGAGTGAAAAGCGAATCGGGCCTTTCTGTGTATTTA
AGTAGCGAATGCGTT