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Detailed information on CNT30538978


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380492Brassica napusManihot esculenta19.127.1985.93199forward
CNT30260575Brassica napusBrassica rapa23.2264.3699.59242forward
CNT30610069Brassica napusGossypium raimondii22.5553.2985.11235forward

Expression of CNT30538978

Peptides detected in this lncRNA

>peptide 1 (51 aa)
ILGLVLFVFLSFCNFVSSFLSYSFIVFFFFCQNTEHMYHLLRNDNSVQFES*

>peptide 2 (88 aa)
MVGKILQRSLSGDNSLNKESKHREHSQPSVLDLLHLQLRESLWISSKTQRVEAASWVEQVLCFSQWSLSSDSVTLNSSHEDHLSRPNG*

>peptide 3 (42 aa)
MVTRPVPKTSEAPGESFTAFPAKAGEDRAMVEAAIRNFLDLF*

>peptide 4 (29 aa)
MAHLQWITSSSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30538978
ATCTTAGGACTAGTATTGTTCGTTTTTCTTTCCTTTTGTAATTTTGTCTCAAGTTTCCTATCATATAGTTTCATTGTCTTTTTTTTCTTTTGTCAAAATA
CAGAACATATGTATCATCTGTTGAGAAATGATAATTCAGTTCAATTTGAGTCATAAGATAAAACGCCAACACAGTTGAGAAATGAGGTTCGGTTTCTGAT
AAATCATACAAAGATACGACAAAGGAAGTTTAACAAATATACAAACAATCTCTTTCGCTGCTGCTCACTCGCATGATAATAACCTTTTAATTCATTCACT
TTCCAGGGACGAAGTTGGTGGCAAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGGTCGGCAAGATTCTCCAACGGTCCCTTTCCGGTGACAAT
AGCCTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAAGCCTCTGGATCAGTAGCAAGA
CCCAGCGGGTCGAAGCTGCCTCCTGGGTAGAGCAAGTCCTCTGCTTCTCCCAATGGTCCCTCTCCAGCGACTCTGTAACCCTCAACAGCTCCCATGAGGA
TCACCTGAGTCGCCCAAATGGCTAAGATGCTTTGAGCGTGAACCAAGCTCGGGGAAAACGCAGCCTAGGGCTCCGAGCATGGCCCATCTGCAGTGGATCA
CTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTCCCATCCGTAGTCACCAGGGAACTCTCCTGTGAGGTAGCTCGG
GGGCTCTCCAGAGAATGGACCCAAGTACTTGACCCTGTCGGATCCGTACCATGGGCTGCCAGATGGACCTGTGGGTTTGACGGTTTTTCTCATGGTGACA
CGCCCGGTTCCAAAGACCTCGGAGGCTCCTGGTGAGAGCTTCACGGCCTTTCCGGCAAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGAA
ATTTTCTTGATCTTTTTTAGTTTTTGTGTTTTTTTTTGTGAC