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Detailed information on CNT30538972


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 3e-163

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30480878Brassica napusArabidopsis halleri33.6166.3686.11288forward

Expression of CNT30538972

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MVGKILQRSLSGDNSLNKESKHREHSQPSVLDLLHLQLRESLWISSKTQRVEAASWVEQVLCFSQWSLSSDSVTLNSSHEDHLSRPNG*

>peptide 2 (42 aa)
MVTRPVPKTSEAPGESFTAFPAKAGEDRAMVEAAIRNFLDLF*

>peptide 3 (33 aa)
LRNEVRFLINHTKIRQRKFNKYTNNLFRCCSLA*

>peptide 4 (29 aa)
MAHLQWITSSSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30538972
TTGAGAAATGAGGTTCGGTTTCTGATAAATCATACAAAGATACGACAAAGGAAGTTTAACAAATATACAAACAATCTCTTTCGCTGCTGCTCACTCGCAT
GATAATAACCTTTTAATTCATTCACTTTCCAGGGACGAAGTTGGTGGCAAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGGTCGGCAAGATTC
TCCAACGGTCCCTTTCCGGTGACAATAGCCTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCG
CGAAAGCCTCTGGATCAGTAGCAAGACCCAGCGGGTCGAAGCTGCCTCCTGGGTAGAGCAAGTCCTCTGCTTCTCCCAATGGTCCCTCTCCAGCGACTCT
GTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTCGCCCAAATGGCTAAGATGCTTTGAGCGTGAACCAAGCTCGGGTTTCCCAAGGCTCCGAGCATG
GCCCATCTGCAGTGGATCACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTCCCATCCGTAGTCACCAGGGAACT
CTCCTGTGAGGTAGCTCGGGGGCTCTCCAGAGAATGGACCCAAGTACTTGACCCTGTCGGATCCGTACCATGGGCTGCCAGATGGACCTGTGGGTTTGAC
GGTTTTTCTCATGGTGACACGCCCGGTTCCAAAGACCTCGGAGGCTCCTGGTGAGAGCTTCACGGCCTTTCCGGCAAAGGCAGGGGAGGACAGAGCCATG
GTTGAGGCAGCCATTAGAAATTTTCTTGATCTTTTTTAGTTTTTGTGTTTTTTTTTG