Detailed information on CNT30538870


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38890|GUN25_ARATH, E-value = 4e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316599Brassica napusCorylus avellana30.747.8981.62136forward
CNT30381644Brassica napusManihot esculenta42.4436.1581.91188forward
CNT30613838Brassica napusArabis alpina47.8659.5591.51212forward
CNT30609427Brassica napusGossypium raimondii44.2431.0682.14196forward
CNT30654253Brassica napusRosa chinensis30.9326.9281.75137forward

Expression of CNT30538870

Peptides detected in this lncRNA

>peptide 1 (34 aa)
WLQSSGTLITQVLAFLRFPWCWWGRRSREQRRNS*

>peptide 2 (68 aa)
MPLLHPTMPRVLRPGQHSLQESVQCSCSWSGHRGTHRACQDQQPWLLQSCLGSVSCCLSISILLCSYI*

>peptide 3 (35 aa)
MAPSIVFGFGFLLSLHFHPPLQLYLTLFLGIEAPR*

Sequence

>CNT30538870
CTGGTTACAAAGTTCAGGGACATTAATCACACAGGTTTTAGCTTTCTTAAGGTTTCCATGGTGCTGGTGGGGGAGGCGGAGTAGGGAACAACGGAGGAAC
AGCTGAGAAGATCGTATTTTTGTCTATAGTACCAGATGCCTCTTCTTCACCCGACAATGCCACGAGTGCTGCGACCAGGCCAGCATTCCCTGCAAGAGTC
GGTTCAGTGTAGTTGTAGTTGGTCCGGACATCGCGGAACCCATCGCGCTTGTCAGGACCAGCAACCATGGCTCCTTCAATCGTGTTTGGGTTCGGTTTCT
TGCTGTCTCTCCATTTCCATCCTCCTTTGCAGTTATATTTGACTTTGTTCTTGGGAATCGAGGCTCCTCGATGATGCACGTGTTTCGGGTATTTTGTGCC
AAAACCCACCAGATAACTCATTTTCCGAGGGTTTTTACCTAGT