« Back to Brassica napus search


Detailed information on CNT30538764


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30526253Brassica napusPhaseolus vulgaris27.7227.6388.184forward
CNT30629861Brassica napusVigna unguiculata26.7317.0988.8981forward
CNT3086859Brassica napusVigna radiata26.7326.8291.3681forward
CNT30238127Brassica napusBrassica oleracea100.6610098.69305forward
CNT30143579Brassica napusMedicago truncatula23.123.19070forward
CNT30623316Brassica napusDaucus carota26.0725.9987.3479forward
CNT30619930Brassica napusCajanus cajan23.4311.8190.1471forward
CNT30409088Brassica napusPapaver somniferum22.1120.4992.5467reverse complement
CNT30174907Brassica napusVigna angularis26.7326.5691.3681forward
CNT30725324Brassica napusLupinus angustifolius26.7340.390.1281forward

Expression of CNT30538764

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MREAGFTEQRSPPSLDSGRITAQSHSDPAWSGGSYPAEPPS

>peptide 2 (45 aa)
SSSVARACDLCGDNKMVEHWPGPTGRICCGMFWAARSKPRVIHVC*

Sequence

>CNT30538764
GTCGAGCTCAGTAGCGAGGGCTTGTGACCTATGTGGGGACAATAAGATGGTGGAACACTGGCCCGGGCCCACAGGTCGGATCTGTTGTGGCATGTTCTGG
GCTGCCCGGTCCAAGCCGAGAGTGATCCATGTGTGCTGAGCGAAGGCTTGGCTCAGGCGGTTCCTAAAGAGGAGGGCAATGCGTGAGGCTGGTTTCACAG
AGCAGCGATCACCTCCCTCTCTCGACAGTGGACGGATAACAGCTCAAAGCCACTCAGATCCAGCATGGTCTGGTGGCTCGTACCCAGCTGAACCACCATC
TTT